HsaINT0186267 @ hg19
Intron Retention
Gene
ENSG00000204920 | ZNF155
Description
zinc finger protein 155 [Source:HGNC Symbol;Acc:12940]
Coordinates
chr19:44492611-44495826:+
Coord C1 exon
chr19:44492611-44492710
Coord A exon
chr19:44492711-44495699
Coord C2 exon
chr19:44495700-44495826
Length
2989 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATGTCTTCTTGATGTTGTAGGAG
3' ss Score
8.6
Exon sequences
Seq C1 exon
ACTGTGGCACGTTTCAGGCAGGATTCCTCCTTCATTCAAACTGCATCACCCAGGAGTCTGCAAATTCCCCAAAGTAGGAGGAAAAATGACCACATTCAAG
Seq A exon
GTGAGGGGGGCGTGCCTCTCTCGCTGTTAAAATTCCATGTCACTACTCATATTTTCATGTGTTTTTCTCTGTCATGAGAAGACTCAAGGGGAAAACAGGCATTTGGGGACCTGTTTGTGCCAGGTGCTTCCTTTATCTCTTTTGTGTTGACTGCATTTGGTTTTTGGTTTTGCTTTGTTTTGTTTTGTTACCATTATTTATTTTATGGAGTATGAAAATTAGTAGAAATGAACAGTGCTCCCACTTCCTTACCTCCCCTCTCTCAAATTATCTGTTTTTATCTTCTCTGCTGTTCGTCATGTACATTTGTAACTGTATTTGTATTGATGATATACATCTAATTGTAAACTGTGCTCTTTTTATATGTTATATAATCTTCCATTTTTATGGTTACATCATATTCCTATTACATTGATGTATCTTTTTATTTATAACTACCTCACGCTCATAGACATATTTTAAGCAACACTGCAGTGACAGCTTTCCTATACATAACCTTTTCCCACAAAATTAATTTTGAAAACCATATGCCATTTTAGCTCAATTTTGAAAGGGTACTTTTGATATGTACCACATTGGCTGTTTTGCAGATAGAATATTTTAACTAGGCACAGAACAAAAGGATGTAACTGCTGCACCACACAAATATTGTTGGAGTTTTCACACTGGAAGAGCTAGATTCTGTGTTCTCCTTGTCTCAGTCATACTTTGCATGTGCTTTATTTACTGGTCTCTTCTTATTCATTTATGTAGTAAGCAGTTTAACCAAAGCAGTAGAAAGCCTTCATTTAAAATGTCCAGTGATACTAAGTTTTGCCAATCACTTGTGTTCTGTTACTACATTTACTCCTCAGCGCAGCGGAATGAGGTTCCTGGTCTCTTCTTCTTCTTGAACAGGTGAAATATGAGAAACCTTCTCAGGTGTACACAGGCAACCAAAGGTCAGGAGTGTTAGCCATTCGGCTCAGGTGAAAAAGAGAAACAAGGAGAGAGACAGAATTCTCCATTGAGCAACCTGTGCCCTGTGATGTGGATGTCTGGAGTGCCCTGTGGAGTGATGGTGTCCCTAGTGGTGCTGCTCCTCCCTGTCCCTACTTGGTGTGACTTCTTGTCACATGTCACTATGACATGGCATCTACTCCAGGCACTGAAGTATACTGATTACCATAGTTGTTATAGAAAATCTTTAAATCCCTTTTGGCAAAAGATGCCTCACACAATGTTACCAGAAGAAATAATGACCTGGGGCAGAAATGTTAGCCACGTGGATACCTAAAGAAAATAAAATTCAAAATCAAAACCTTGAGCACAGAATAAAGGAAAAACTCCAAACAGATAGGAACAAAGGACACTAAAAGGCCAATGTAAAAGGAGAAGTAGAGATGGCCAATAACCTTGAAAAGTGATGGTTTTCATTTGTAATCAAATAAGTGAGAATAATAGAATGATTTGTTCCCCAAATCAGATTACCAAGACTGTGGGAATACTTATAACCTGCTCTTGGTCATGATAAAGAGAAGCAAAGTACTTGTATTCTGTTCAAAGATTATGGAGGTAGGTAAAAAACTGGGAAGAAAGCATGCAGTTATATGATCACAGTTCTAAATGTGCTTATTTTTTGATGTTTTAATTTTCATTTGAAATTATTATTTTAAACAATGAGAGAGTAAGATGTTCTTACATCTTGCTACATCATTACTTAATGATGCTCTTTACAGGATTGATAATGGAAAATATGTAAAATTAAATATTCTTTACTGTAGCTAAAAGTAGGTCATCAGATCTCTGGAATACTATGCAGCCATGAAATAGATAATGCTAGTAACAACAGTAAAAAAGATTCCAGCTAATGTTCATTAAACAGTGGCACAGATGTTTCCAAATGCTATGTATTTCCTTGTTTAATCCTTTAAAATACTGTGCCAAATAAGGACTATTATTTAGAGAGGAAAGTAAATCCTGTAGGCAAACATGTCTAAGGCCACACAGTTAGGAAGGGGCAGACCCTTAGGATGTACAGTGATGCATTCTGGCTTCTGATCAGGACACTGAAGGCTGCAATTAACATTTGTGGTTTGTACCTTGAGAGTAGAGGACACACTACATAACTGTCCCACTCAGCTGTCCACACTGGTACTGTGGAGTAGGTTCACTGTGCACTGATTACCAACTTGTGTGAGTCCTGTGAGACAGAACACGATCTCACTCAACAGATTACGTGAAGCAGATTTGTTATCTACAAATTGGCAGCAAGGGAGCACAGGAGTGTAGGATACACTGTGAGGTGGCCATCCAAGGCTGAAGAAAACGTCCTGGGGTGGGTAGAATCTTGACCCCATTTCCACCAGAGCAGAGGTACCCCAGAAGGCAGCCCACCCGAGGTTATATACCTCCGGGGCAATACGACTTACTGGGCACTTTCTCCCTAACTCAAGACATTATCTTCCCTAGGAAGGACAGGAACATTGCATTGCTAGCATGTTCTATGTTTATTCTTCAAAACTATACACAAGAAAGAATGATTCAAGGCCACCCTGAAAATTACCCACAGTTACCTAAAACTTGTTAGTTTAGCAAATACTAAAGAAAAGCAATAGCATCCAGGGTTTGAGTACGAGAGAGGAGGACCCAACAAAGTTGGGACTGAATTGTTTAATGTTGCTGGGGCAGTTGGCAAGATGTGTCGAACCTATATATGGGTAGCTCAGGATGCAGCATGTAGAGTCCTAGAGGGTTACATACAAGTAGACTCAATGAGTGCACAGAATAAATGTATGAGACTTCATCATTGCACTTCTGGTGGAGTTCAGGAAAATCAGTATGTGTCATTGTCAGGATATAGACAGAATGAGTGGGAAATCTCTAAGTTGACCTACATCCCTCAATACTGAGAACAACTTTCCACTCATCCCCTTCCCCTGCTCAATGCCGCTTCTCCCCCAGTAGTCCTTGGTCATAAGATTGAAGTTATGTCTTCTTGATGTTGTAG
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204920-ZNF155:NM_198089:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)