HsaINT0186424 @ hg19
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:12996]
Coordinates
chr16:3165830-3166548:+
Coord C1 exon
chr16:3165830-3165921
Coord A exon
chr16:3165922-3166427
Coord C2 exon
chr16:3166428-3166548
Length
506 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GATGTTTCACATTGTTTCAGATG
3' ss Score
9.26
Exon sequences
Seq C1 exon
CCCTCCCCTCCCCCCGGATCCCCGTGCTTTCCCGAGAGGGGAGGACCAGAGACCGGCAGATGGCTGCAGCGCTCCTCACTGCCTGGTCCCAG
Seq A exon
GTGAGTGGCCCTTCCCCGGCCCCTGCATGGTACTCAGCCCTTCCTGCATCTGCTGGTTCTGTGTGAAAGCCAGGACCCCGCTGGCCCCACTTGCAGCCAAGCCTGAAGCCTGGGGCTCTTGCTAGTGTTGCTGGAATTGTCCAGGCTCAAGGCCCATGGTCAGGCCTGGGCCAAAGCTGGAGGAGAAGCAGCAGGAATTAGAGACACAGGGCCTCTCGCTGGTAGCCGTTGGGAACCGTCCTCCGAGGTCTCAGCTGAGGCTGGGGGCTGCATGGACATCCTAAGTCTTAACTGTGATCCCTGAAAATACCTCTTGGTCTTTGTTCTTTCTCAACTCCCCAGAAGGCCTTGGGTGGCTCACCTGCTTCCCGATCAGATGGAAGTGGCAGGCCTCACTCGACACAGTGGGTTGGGAGTCCGGGGTCTCACCACACATCTCATGCCATGGTGTCCCTCCACCGTGTCCACGTCATGTCCTGGAGAGTGGATGTTTCACATTGTTTCAG
Seq C2 exon
ATGCCAGTGACTTTCGAGGATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGCTGGACCACACGCAGCAGAACTTCTACAGGGATGTCCTGCAGAAGAAAAATGGGCTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386-ZNF205:NM_001042428:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(94.9=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCGTGCTTTCCC
R:
CCAGTGACAGCCCATTTTTCT
Band lengths:
198-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)