HsaINT0186424 @ hg38
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3115829-3116547:+
Coord C1 exon
chr16:3115829-3115920
Coord A exon
chr16:3115921-3116426
Coord C2 exon
chr16:3116427-3116547
Length
506 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GATGTTTCACATTGTTTCAGATG
3' ss Score
9.26
Exon sequences
Seq C1 exon
CCCTCCCCTCCCCCCGGATCCCCGTGCTTTCCCGAGAGGGGAGGACCAGAGACCGGCAGATGGCTGCAGCGCTCCTCACTGCCTGGTCCCAG
Seq A exon
GTGAGTGGCCCTTCCCCGGCCCCTGCATGGTACTCAGCCCTTCCTGCATCTGCTGGTTCTGTGTGAAAGCCAGGACCCCGCTGGCCCCACTTGCAGCCAAGCCTGAAGCCTGGGGCTCTTGCTAGTGTTGCTGGAATTGTCCAGGCTCAAGGCCCATGGTCAGGCCTGGGCCAAAGCTGGAGGAGAAGCAGCAGGAATTAGAGACACAGGGCCTCTCGCTGGTAGCCGTTGGGAACCGTCCTCCGAGGTCTCAGCTGAGGCTGGGGGCTGCATGGACATCCTAAGTCTTAACTGTGATCCCTGAAAATACCTCTTGGTCTTTGTTCTTTCTCAACTCCCCAGAAGGCCTTGGGTGGCTCACCTGCTTCCCGATCAGATGGAAGTGGCAGGCCTCACTCGACACAGTGGGTTGGGAGTCCGGGGTCTCACCACACATCTCATGCCATGGTGTCCCTCCACCGTGTCCACGTCATGTCCTGGAGAGTGGATGTTTCACATTGTTTCAG
Seq C2 exon
ATGCCAGTGACTTTCGAGGATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGCTGGACCACACGCAGCAGAACTTCTACAGGGATGTCCTGCAGAAGAAAAATGGGCTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386:ENST00000382192:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.665 A=NA C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(94.9=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCGTGCTTTCCC
R:
CCAGTGACAGCCCATTTTTCT
Band lengths:
198-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains