MmuINT1035478 @ mm10
Intron Retention
Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23580112-23580862:-
Coord C1 exon
chr17:23580771-23580862
Coord A exon
chr17:23580233-23580770
Coord C2 exon
chr17:23580112-23580232
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGTTTTCATGATGTCTCAGATG
3' ss Score
7.75
Exon sequences
Seq C1 exon
TTGTTCCTTCTCCCTGGACTCCTGTACTGTCCCGAGGGGGACGGACCAGAGAGCGAAAGATGGCTGCTGCACTCCTTACTGCCTGGTCCCAG
Seq A exon
GTGAGTGACTCCTGAGGGTCTCCAGCTGCCCCAGGACAGAGGTAGGGCTCTTCCTGGTCATCATATGCTGCTCTTCCCTGTAGTTGGCTCAGCTTGTAACTCCAGAAGGCTGCTTCCCTTCTGACGTGGAGTTAGAACCTACTGCCTGTGACTTGCTAAAGTGCTGCTGGGACCTCCTGAGAGCCCTTTGCCGGGCATGGGGCTCATGGCAGCCCTGGCACAGCTGATGGAGAAGCAGAGGCAGCAGACAGACTGCTCTGCCATTGTGAACGCTCCTCTGAGAGATGAGTGTAGGGTAGGAGCTCTGTGAGGGCCTGACCTTTGGCCACGTACCCTAAAATGCTGCCTTGCTCCTGCCTATCATCTTTCACAGAAGGCCATCCTGGGTGGTGCTTCTGACTATCAAATTCAAGGGACGGGGTCCCTGGTCCTGGTGGTGGCTTGAAGGCCTGATCTTGTGACACATCTTAGGGTTGTCATTTTTTTCTTACCGTGTCTGCAGCAAACCCTGAATAGTCTTGTTTTCATGATGTCTCAG
Seq C2 exon
ATGCCGGTGACCTTTGAGGATGTGGCCCTGTATCTCTCCCAGGAGGAGTGGGGAAGGCTGGACCACACACAGCAAAATTTCTACAGAGATGTACTACAGGGGAAAAACGGGCTGGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012:ENSMUST00000057029:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCTTCTCCCTGGACTCC
R:
CAAAGCCAGCCCGTTTTTCC
Band lengths:
211-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types