RnoINT0167757 @ rn6
Intron Retention
Gene
ENSRNOG00000003455 | Zfp13
Description
zinc finger protein 13 [Source:RGD Symbol;Acc:1304577]
Coordinates
chr10:12912729-12913458:-
Coord C1 exon
chr10:12913367-12913458
Coord A exon
chr10:12912850-12913366
Coord C2 exon
chr10:12912729-12912849
Length
517 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTTGTCATGTTGTCTCAGATG
3' ss Score
8.17
Exon sequences
Seq C1 exon
TTCTTCCTTCGCCCTGGATTCCCATACTGTCCCGAGGGGGACGGACCAGAGAGCGACAGGTGGCCGCGGCGCTCCTCACTGCCTGGTCCCAG
Seq A exon
GTGAGTGACTCCCAAGGGTCTGCAGCTGCCCCAGGACAGGGGCCAGCCTCTTCCCGTCATCACATGCTGCCCTCTTCTGTAGTTGGCTCAGCACATGACTCCAGAAGGCTGCTCCCCCTGTAACGTGGCGTCAGAACCTACTGCCCGTGACTTGCTAAAGTGCTGCCAGGGCCACCCGAGAGGCCTTGCCTGTGCGCGGGGCTCCTAGCAGTCCTGAGCAGCTGATGGAGAAGTGGAGGCAGCAGAGAGACTTCTGTCATTATGAACACCCCTCTGAGGGATGAGCATAGGGTAGAGGCTCTGCGAGGGCCTGACTTTTCACTGTGTACCCGAAAACGCTGCCTTGCTCCTGACCATCCTGGGGTGGTACTTCTGACCAACCATCAAATCCAAGTGATGGGGTTCCTGGTGGGTGGCAGCTTGAAGGCCTGGTCTTGTCACACACCTTGGAGTTGCCATGTTTTTTTTATCATGTCCGCAGCAAACCCTGAATAGTACTGTTGTCATGTTGTCTCAG
Seq C2 exon
ATGCCGGTGACCTTTGAGGATGTGGCTCTGTACCTCTCCCGGGAGGAGTGGGGAAGACTGGACCACACACAGCAAAATTTCTACAGAGACATACTACAGGGCAAAAATGGGCTGGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003455:ENSRNOT00000004589:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.088
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCCCTGGATTCCCATACT
R:
CCAAAGCCAGCCCATTTTTGC
Band lengths:
206-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]