BtaINT0165029 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005572 | ZNF205
Description
Bos taurus zinc finger protein 205 (ZNF205), mRNA. [Source:RefSeq mRNA;Acc:NM_001034473]
Coordinates
chr25:2561718-2562304:+
Coord C1 exon
chr25:2561718-2561809
Coord A exon
chr25:2561810-2562183
Coord C2 exon
chr25:2562184-2562304
Length
374 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGCCTTCTGTGTTATTTCAGATG
3' ss Score
9.42
Exon sequences
Seq C1 exon
CCCTCCCAGCCCCCCAGACCCCTGTGCTCTCCCGCGAGGGGAGGACCAGAGACCGGCAGATGGCCGCGGCGCTCCTCACCGCCTGGTCCCAG
Seq A exon
GTGAGTGTCCACGTCCATGGCTGGAGGCAGAGCCAAAGGACGTGGAGGGACAGCATCTGTGACAGAGCTGTGCTCCGGATCCTAGCGCTGGACCTGAGGGTGGGGGCCAGAGACCCTGAGCTTTGGAAGTGGTGCCGAAAGGGAGTCTTGCTTTTCTCCTGTGCTGTCCACAGTCGCATGGTTCTTACCCCCAGAAGTCTTCCTTAGGCAGCTGCCCTGCTTCACCAGCAGACCCAGGGCGGGCCTCACCCAAGTCGGCAGGATGGGGGTCCAGGTCTGTCCTCGTCCTGGCACCACTGAGCGCCTCCACCATGTCCTGATGAATCCTGGAGACGGGGCATGTCCTGGAGAGGGGGCCTTCTGTGTTATTTCAG
Seq C2 exon
ATGCCGGTGACCTTTGAGGACATGGCTCTGTACCTCTCCCGGGAGGAATGGGGGCGGCTGGACCACACCCAGCAGAGCTTCTACAGGGAGGTCCTGCAGAAGAGGAGCGGGCTCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005572:ENSBTAT00000007323:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCCCTGTGCTCTCCC
R:
GAGAGCCCGCTCCTCTTCTG
Band lengths:
194-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]