HsaINT0186719 @ hg19
Intron Retention
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129343627-129349307:-
Coord C1 exon
chrX:129349167-129349307
Coord A exon
chrX:129343690-129349166
Coord C2 exon
chrX:129343627-129343689
Length
5477 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTGTCTCGTGTTTCTCCAGCTC
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGTCGTCGGGGAATTCACAAGTGCATTGAATGTCATTCCAAAATAAAAGATTTTGCAAGCCACTTTTCTATATACATCCACTGCAGTTTTTGCAAGTACAATACTAACTGTAACAAAGCCTTTGTAAATCATATGATGAG
Seq A exon
GTAAGTTAAACATGTAAACTGCCAATCAGAATTTCCATTTGGGTCATTTGTTTTTTGAAAACAGAGTTATCCTATTGAAAGCAAGTTTGTCTCATCAAGGAACTAAAAGGGTCTAGCAATAGGGAACTTCTAAGATGTTCCTTGTACTATTTTCCAGCATAGTAACTCATAAAATTACTGGGACAAAAACTCTGAGAACAATTAGACTAATGAAATTAAAATGAGTTTGTTAGGGAAATTTGTTTTTTCTATGGGACTTTTTTTTCTTTTATGTCTTTCAAAAAGTGGTTATTTTTTAACATAAAATGTTAAGTGTTTTCAATATATTTATCAAATAAATATGATCAGCTCTTGCATTCCACATCTGTGGATTCAACCAACTGTAGATAAAAGTGTTTTTAAAAAATTAGGTCTTTACTGAACATGTGCAAACCTTTTTCCCATTATTCTCTAAACAATACAGTATAAAACTATGTAATAGCAGTTACATTGTATTAGGTATCATAGGTTCACAAATCTAGAGATGATTTAAAGTATACAGCAGGATATGTATAGTTTATGTGCAAGTACTATGCCATTTTATATCAGAGACTTGAGTCTCTGCAGATTTGGATACCTGCAGGAGGTCCTAGAACCAATCCCCCATGGATACAGGGACCCCTGTATATGTAATTTCCTGAGTGTTATCCTCTTCACAGCGATCACTTTGAGAGGTTCCAGGCTTTTTAATGATGCTAAGAACATTATCCTGTCTCTGTCTCCCGCATCTGTCTGTCCATTTGTCTTTATGATCATCCATCTTTGCATTCATTCAATGAAACATAAGAGACTGTAGGAATATTCCAGTCATGATGCTACCGTTAGAATTCCTTTTCATGCATTGATTCAACTTAATTTGAGCACCTATGGTCTACTCTACACAAGGGAAAGACTTCAGAGCCCCCCTTACTTTCATTTGAACCTCATTCACAGGGGCTTGCTTTATTCCTTCAGATTGGATTTTATTTTAAATAACCAAAAAGTTTCCAGATATAAGTTCATTATTCTAATTAAGATAGTTCCATTTATTTTCAGTTAGAAATAAGATACAACTAGCCAGGCACAATGGCTCATGCCTGTGATCCCAACACTTTAAGAGGCCAAGGAGGGAGGATTGCTTGAGCCTAGGAGTTCAAGACCAGCCTGGGCAACATAGCAAGACCTCATTTCTATTTTTTAAAAAAGAAATAGGTATAACCAATAAAAGTTGTTTTCTTGCAGATTATAACAAGACCTCTATATTATTTTCTGCTCATAATCAGCTACCACTTTGAAGGATTCACCCACGTTTTTTGATGGCTTCAGCACCTGGCTTGCAGGGATTTTTTTCCCTTTGGTGGTCAGCCTGACCTTATGATACCTTTACTTCTTTAGTGCTAGCACTTTACATCCCTTTCTGCTTTGTTGTATCCCCTTTCTTAACACCATCCCATTTTACCTCATTGTAGACAATACTTATTTTGAATTCTCATTACCCCATGACTTTCAGAGTCTTGACCCCTTTTTCTAGTCCAGTAGTATCAATTCAATTTTGTAGCCAACCATGCCCTCAAGGTCTTCTGTTTTGAATGCTGCTTTGTTTCTGTCCTAAAATCCTTTATATCTTCAGGCATGCTTAGTCTTGCTATCTTTGCATCTTTTATCCTTTTTGATGTATCCCTATGCTCAGTTCTAGACTACCACACCATGCTTGATTCAATCAGCTCTGAATTCATGATCTTTAATTTGGTCCTGCCCTTTTAAAAATACCGCTTTGTTTTTGTTTCGTTTTGTTTTGTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCATGCCATTCTGCTGCCTCAGCCTCCCCAGCAGCTGGGACTACAGGCACACGCCACCACGCCCGGCTAATTTTTATTTTTATTTTTATTTTTTTTGTATCTGTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCAAAAATACCACTTTGTTTTTATCTACAACATCTGTCAGATTTTATTCTAGTCCCTCAGTTGTTAACCTTGCCTAATAATTACTCAGAGGTCATACTTTTCGTTTTTCTCAAGATTAACTTTTTCCTGTCTCAAGGTTTTTTTTCCTTCAGACATTAATCTCAAAAAACAGACATGTCCCACTTTTTTTAAGTTAACCCTGTTCGTCATCTCTTGCATTTCCTCCACACCCTTATTTCATTATTTTGGACCTTCAGTTCATCTCTTTCTCTCTACCACATTCATTGTGTCTGTAGATATTTTCAGGCTTGTTTTTAGGATGAGGAAGATCTGCCTTTACTTTGCATGCTTTCTTGTTCCTCCATTTACCATCAACATTTATAAAGAGTATTCTTTACTAGCCTGTTTGTCATTTTTTGACTCTTTGTGATTTGAGTGTCACCCCCCCACCCCCCAACGCCACCTACATACAGCTAAAGCTTCTCCTTTAAAGGTTATCAGTCATATCCTAACTACTGGATGTACTCATTATTTTTCATTCTTACTCCTCTATGACTTCTTCAGAGTATTTGACATTTTTGATCACTTACTTTTGGAACTCTTCTCAACTTCTGTCTGTTAAACTGTTACCACCATTTTTCTTCTTTCCTTTTGGCTGCTACTCCTCTATGTAATTATCTTTTCTCCCTTCAACTGTTCTTGTCCCCTTATAATCCCTTTCTTGGTACCTTAACCATTCTTAAAGTTTTATCTTTTACCTTTCAACTGTAAATCCTCTAGATTTCAAAGCCGAGTTTCCCTGAGACCCAACTGTTTGTTTCTAACTAGGATTCAAACCACTTTTACTTCAATACCCTTTAAGCTCAGTCTGTTTCAGGGCATCATTTGCATAAACATGAAGCACCAGCTAGAAATAATTTACTATCCCAAGTTTCTGAAGCCCATGGAGTTCTCTTGATCTGCCACTATACATCCTAGCTTCCGGAGAGTCCACCTTTTGCAGTTTACCAGTCTGCCTCTTCCACTACTACAGTGGTTCTGCACCTATACCCCAGTTTCTCTAAAGCAGACCCTAGCCAACCCTTCCCCCAGTACACTGCTGTGATTAATATTGTTCTCTTATTCTGTGCTAAACACTTGGCTGCCCTAGTGAGGCTTTAATTCTGCCACTAATTTATAGAGGATTAAATTGGAAAATATTTTTGGCATTACTTAAACCCATGTGTCATTCCGTCCTCCCCTCTCCCATTTTCCATAGGCTCACCAACTGTCTTGTAGAACCTTCAGCCCCATTCTATCCCCAGACATTCCCAATTGACCTAAAGTTACCTTCATAACATTTTCCTAATTTCTGGTGAGCCCCTGCACTGTCATCACACACATTGAGCTCTTACTCATCATTAACCTCATCTAGAACTGAAAGCTTCCACTTCTACTCTTCTGAGGGCCTCGTAGGTCCCTTTGCTTTTCCCCTACTTCAAGGGTACACTGTTTCCCTCATTGCTTCAGGTACCTTCCTCTGAATGGTGCACCCTCACTCCTACTCGGTGTGGACTTTTGTCATAGGTTTGAGTTCTGTATGTTCAGAGGCTTCATTTTCTCAGAGGTTGAGTACCTTTATTCCCAGGCTATGCCAACTCTTATGAGAAGACAGGCCCTCAAAATTGATCTATCTTCCCCAATGTATAGGCTCTTCATATTCAGTATCTAAAGTAGTTTTTCTTATTCTTGATTATTCTCTGAAATGCCCCTCTCCTTCCTCTCGTTTCACCCTCTGTGAAGTATCTGATCAGCACAGCCAGTCACAAGAATCATTCCTTTCTTTGAGTTCCGTAACATTCTGCTCTTCTGCCTCACATGTGTCTCTATTACCTCTTTGAGAAAGAAGCTCTTTCGTTGTATTCACCATGGTGCCTATTCTGAGGATGTTTTCTTGGAATTACAGCTAGCCAGAATCTTTATTTTCCCATGCATATATAGTAAGCTGGTGATGGTTACCTTGTGTCTGAGGGTAACTGTTGACCTGCTGTGTTGGGTCTGTCAGTGCAAGATAGGGCTAGTGCTTCTCAAACTAGCTTGCATAAGAATCAGCTGGAAAACTTGGGAAAACAGATTTCTGGGCCCCACTGCCAGAGATTAGTTCACTATGTTTGCAGTAAGGCCTGAAACTTTGTGTTTCTAACAAGCTTCTAGGTGATGCTGATGATGCTGGTCCATGGACCACACTTTGAGTAATACTGTGCTAGGCTAATCCTGGCTAATCTTGCCTGGTTGTCTAACACAGGAAGGCTTTCCTTATCATTTTAAAGGGAGGCATAAAAGCTATTACCATTGGCTGTGAAGCTTGATTAGTGGTTTTCTGATCTGTGTGTAGGAGAAGCATTGTTTTAATTCATGAGCTCTGCTCCTTAATTTGCTCTCTTTGAAAGTTCTCCTGGTAATTGCAAAGGACTCTTTAAATGTTTCATGTTTATTGAATTAAGCAATGGCCTTTATCTCAAGTAGTGTTTACTTCCAGGATCATTCAGATTATCCCCCTCCCCAAACATATTAAGATTAAAATGTAATAAGTAATTATTATTTTCCAGCCTGGGTGACAGAGCAAGACTGTCTGAAACAAAAAATAATAATTATTATAACAATTTCTATCATAGCAAAATACATTATCAAATATCCTTTAAATTGTTCTCTTAATAGTTAAAAAACTTTAATTTGACACTGCATTTTTAACTCAAGCATTGTTTTTAGTAATGGTGAGGTACTGATCATCTAAGAAAATTCTCAGGGAAATATGTCATTAGAAAATATAAAGGTAAAGTGGAATGTAAGTTAAAATTCTTGAATTAAACAGAGATGACTGTCTTCGTCCATTCAGGCTGCTATAACAAAATACCATAGACTGGGTAGCTTATAAACAACAGAAATTTATTTCTCACAGTTCTGGAGGCTGGAAAGTCCACGATCAAGGTGCCGGCAGATTCGGTGTCTGGGTGAGGGCCCATTCCTCATAGACAGCACCTTCTCACTGCGTCCTCACATGGTGGAAGGGGCACACTGGCTCTCTAGGATCTCTTTTATAAGTGCACTAATCTCATAAGGGCTCTGCCCTCATGACCTAATCACCTCCCAAAGGCCCCACCTCTTAATGCCATCACTTTGGGGGTTAAGATTTTAACATGAATTTTGGGGTGACACAGAAATTCAGATTATAGCTTTAACCAACAGAATTTTATTATTTAGATCATGATCTTTTATTCAAAACTAAGAAATTAAGCATTGGCTTGAAATGTGGTCAGAAAATTAATATGGTGTTGTATAATAAAATTAATAAAATCTTGTTTGTCTCGTGTTTCTCCAG
Seq C2 exon
CTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTCAGGAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-ZNF280C:NM_017666:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=43.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)