MmuINT0178887 @ mm9
Intron Retention
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:45900442-45901872:-
Coord C1 exon
chrX:45901735-45901872
Coord A exon
chrX:45900505-45901734
Coord C2 exon
chrX:45900442-45900504
Length
1230 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTTTGTCTTTAATCTCTCAGCTC
3' ss Score
6.91
Exon sequences
Seq C1 exon
GTGTCACCAGGGAAGTCACATGTGTATTGAGTGCCGTTCCAAAATAAAAGATTTTTCAAGCCACTTTTCTACACATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATCATATGAG
Seq A exon
GTAAGTTGAACATGCCAGTCAAAATTAACTTTCTGGTCTGTGGGTGTAGCTTCCTGGTTCGCCATTGCCTAACATATAGAAAGTTCTATGTTCAATCCTGAGCACACACACACACACACACACATACACACACACACACACACACACACACACACACACACACACACACAAAGATGCTATTCAGATTTAATGGCTTGTTATGCCTATAATTCTAGTACTTGGGAGTAAGAGGCAGAAAGGTCAAGAATTCAAGCTTATCTCCAGCTATATATTAATTTTAAAGCTAGACTGGGCTTCATGAGACTCTGTATCAAAAATTACTACTCTTTGAGGAGTTTGTTTGATTGTTTGTTTTAAAGACACAGTTGTCATATTACAATCAAGCGTGTCTCATCATGGAAGTAGGAATGTCGAAATAGCGAATGTCTAGAATGTTGCTTGTATATTTTCAAATATAACAAATTATAAAACTAATGGGACAGAAATTTTTAAAAAAACAGTTAAATTAATAAAATTAGAGTGGCTTTATTAAGTAAATCCATGTTTAAAAACTTAACTTATTTTAATTTTATGTGTATTAATGTGTTACCTGCTTATGTGTACATGCACTGAGTTGGTGTAGGGCCCATTGATACCAGAAGAGCGTGTCAGATTTTCTAGGACTGGGGTTACAGATTGTGAGCTACCATGTGGGTGCTAGGAAGTGAAGCTAAGTCTTCTAAAAAAAAAAGCAACAAGTGCTATTAGTTGCTGAGCCATCTCTAATCCCCAGGCTCCGGGCTTTTTAACAATGCTAAAGAACATTCCTTCTCTCAAGCCATAGCCATCCATCCTTGCCCTCGTTCAATGGCAAACACAGAAAACTCCATTTGTACTCAAATGTGTGCTTAGTCACTAAAAACAGTAACATTGTCTGAAAAAAGAATCTGTTTCTCAGCAACTGCGGGTTCAGGGGATCTGATGTTCTTTTCTGGCATAATTATTTCCCAAAGTCTTCCCTAATGCCATTACATTGATTGAGGTGACGGAGAGGTTACAATCACAACATATTAATGGATGGGTACTTGCTCTGGCCGTACCAGTGATCAATATAATCTCATTATTATGTGAATGTCATTAACTTCTGTTCAAAAGTAAGAAAATACGCATAGACTTGAAAACATGCTCAAAGTTAATATGACTTATTAGATCATAAAAGTAATAAAATCTTGTTTGTCTTTAATCTCTCAG
Seq C2 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTATATTTTTAAGAAGCAATCACGAGCTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-Zfp280c:NM_153532:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCAGGGAAGTCACATG
R:
GCGAGCTCGTGATTGCTTCTT
Band lengths:
198-1428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: