RnoINT0167959 @ rn6
Intron Retention
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135373698-135375439:-
Coord C1 exon
chrX:135375302-135375439
Coord A exon
chrX:135373761-135375301
Coord C2 exon
chrX:135373698-135373760
Length
1541 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTTTGTCTTTCATCGATCAGCTC
3' ss Score
5.39
Exon sequences
Seq C1 exon
GTGTCACCAGGGAACTCACACGTGTATTGAGTGCCATTCCAAAATAAAAGATTTTTCAAGCCACTTTTCTACATATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATCATATGAG
Seq A exon
GTGAGTTGAATGTGACAGTCAGAATTACCTTTCTGGTCTGTGGGTGTAGCATCGTGGTACACCATTACCTAACCTATATAAAGTTCTAGGTTCAGTCCACAGCACAAAAATAATGCCATCCAGATTTAATGGCTTATGCCTATTAATCCAGCAGTTGGGATATAGAGGCAGAAAGATAAGAAATTCAGGCTTATCTCCAGCTGTATATTAATTTTAAAGCTAGCCTGGACTTCATGAGACCCTTTATCAAAAATTACTACTCTTCCAGGCGTTTGTTTGTTCGTTTGTTTGTTTTAAAGACACAGTTGTCCTATTACAAGCCCAAGTGTGTCTCGTGGAAGTAGGAACATAGAAATAGAGAATGTCTAGAATGTCCCTTGTATGTTTTCAAGTGTAGTAATTGATAAAACCAATGGGACAGAAATTATTTAAAAAAACAGTTAAATTAATAAAATTAAAATGGTTTTGTTAAGTAAATGCATGTTTAAAAACATTTCTTAGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTCGCAAGGCCCTGGGTTCCGTCCCCAGCTCCGAAAAAAAAAAAAAACATTTCTTTTGCGTGTATTAATGAGTTGCCTGCCTGCCTATGTATACATGCGCTGAGCTGGTGTAGTACCCGTGGACACCAGAAGACAGTGTCAGATTTTCTAGAACTGGGGTGACAAGATTGTGGGTGCTAGGAAATGAAGCCAAGTGGCTGCGCCCATCTCTAATCCCCCGGCTCCGGGTTTGAATGATGCTAAAGAACATTCCCTTGCATTCCCTCTCCTTCCCTCCAGCCCGTAAACTTCGATCTTTGCCCTCATTCAGTGGCAAACACAGAAAACTAAGTGTATACTCAACCGTGTGCTTATTCACTAAAAACAGTGACGTTATCTGGGAAAAGAATCTGTTTCTCTGTAAGTGGATTCAGAAACTCCAGCTTCAGGGGATCTGGTGTTCTCTTCTGGCCTCCATGAGAAGGTGGCGCACGGGCATACACATGCAGCCAAAACACTCATAAAATAAAAGTAAATAAATACATCTTTTTTAAAAAGTAAAAAATTGTAAAGAGAGAGAGAAAAAAAGGAAAGAAATGGGAGAAAGAAACAGACATGTCAACAAGAAGAAGTGTTCTGGTGGAGAGCCCATCCCTTCACACTATGTTACACAGTAGAGGGGACAAGCCAGCTAGCTGTCCTGGGTCCATTTTTATAGGGACACAAATCCTGTGTGTAAGGATTCTGCTTTTGTAACCTATTTATTTATTTATTTCCCAAAGTCTTTCCTAATGCCATTACGTTGATTGAGGTGACAGGAGGTTACAATCCTAACATATTAATGGATGGGTACTTATATTGATCACAGGCCACACCAGTGACCAATATAATCTCATTGCTTATGTCATTAACTTCTATTCAAAAGTAAGAAAATAAGCATAGACTTAAAAACATGCTCAAAGTTCGTATGACTTATTAGATCATAAAAGTAATAAAGTCTTGTTTGTCTTTCATCGATCAG
Seq C2 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTGTATTTTTAAGAAGCATTCACGAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797:ENSRNOT00000044435:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCACCAGGGAACTCACAC
R:
TGAGAGCTCGTGAATGCTTCT
Band lengths:
200-1741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]