HsaINT0188395 @ hg19
Intron Retention
Gene
ENSG00000197162 | ZNF785
Description
zinc finger protein 785 [Source:HGNC Symbol;Acc:26496]
Coordinates
chr16:30596443-30597092:-
Coord C1 exon
chr16:30596728-30597092
Coord A exon
chr16:30596572-30596727
Coord C2 exon
chr16:30596443-30596571
Length
156 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCATTGTTTCTCCTTCGCAGGAT
3' ss Score
11.11
Exon sequences
Seq C1 exon
GTAAAGGCAGAGAGGAAAGGCGAGGGGTGTTGACGCCAGGAAGGTTCCATCTTGGTTAAGGGCAGGAGTCCCTTACGGACTTGTCTGAGGAAAGACAGGAAAGCGCCAGCATCTCCACCTTCCCCGGAAGCCTCCCTTTGCCAGGCAGAAAGGGTTTCCCATGGGGCCGCCCCTGGCGCCGCGCCCGGCCCACGTACCCGGGGAGGCCGGGCCCCGGAGGACGAGGGAAAGCAGGCCGGGCGCCGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCTCCCGAGGAGTGGGAATGCCTGCGGCCAGCGCAGAGGGCCCTGTACCGGGACGTGATGCGGGAGACCTTCGGCCACCTGGGCGCGCTGG
Seq A exon
GTGAGGCCGGGCCCTCCGGCCGGGACCCCCAGTCCGTCGGTGGGAAGCGGTGATCGGTGTCCCCAGAGGCTAGTGGGCTGGAAGCGGGGCGCCGAGGGAGCAGTCTCATTCTCCCCTCCCGTGCGCTCAGCCGAGCCCATTGTTTCTCCTTCGCAG
Seq C2 exon
GATTTTCAGTTCCCAAACCCGCTTTTATCTCGTGGGTGGAAGGAGAAGTGGAGGCGTGGAGCCCGGAGGCCCAGGATCCCGACGGTGAGAGCTCTGCAGCTTTCAGCAGGGGCCAAGGACAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197162-ZNF785:NM_152458:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.531
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCAGGCAGAAAGGGTTT
R:
AGCGGGTTTGGGAACTGAAAA
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)