HsaINT0188395 @ hg38
Intron Retention
Gene
ENSG00000197162 | ZNF785
Description
zinc finger protein 785 [Source:HGNC Symbol;Acc:HGNC:26496]
Coordinates
chr16:30585122-30585771:-
Coord C1 exon
chr16:30585407-30585771
Coord A exon
chr16:30585251-30585406
Coord C2 exon
chr16:30585122-30585250
Length
156 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCATTGTTTCTCCTTCGCAGGAT
3' ss Score
11.11
Exon sequences
Seq C1 exon
GTAAAGGCAGAGAGGAAAGGCGAGGGGTGTTGACGCCAGGAAGGTTCCATCTTGGTTAAGGGCAGGAGTCCCTTACGGACTTGTCTGAGGAAAGACAGGAAAGCGCCAGCATCTCCACCTTCCCCGGAAGCCTCCCTTTGCCAGGCAGAAAGGGTTTCCCATGGGGCCGCCCCTGGCGCCGCGCCCGGCCCACGTACCCGGGGAGGCCGGGCCCCGGAGGACGAGGGAAAGCAGGCCGGGCGCCGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCTCCCGAGGAGTGGGAATGCCTGCGGCCAGCGCAGAGGGCCCTGTACCGGGACGTGATGCGGGAGACCTTCGGCCACCTGGGCGCGCTGG
Seq A exon
GTGAGGCCGGGCCCTCCGGCCGGGACCCCCAGTCCGTCGGTGGGAAGCGGTGATCGGTGTCCCCAGAGGCTAGTGGGCTGGAAGCGGGGCGCCGAGGGAGCAGTCTCATTCTCCCCTCCCGTGCGCTCAGCCGAGCCCATTGTTTCTCCTTCGCAG
Seq C2 exon
GATTTTCAGTTCCCAAACCCGCTTTTATCTCGTGGGTGGAAGGAGAAGTGGAGGCGTGGAGCCCGGAGGCCCAGGATCCCGACGGTGAGAGCTCTGCAGCTTTCAGCAGGGGCCAAGGACAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197162:ENST00000395216:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.597
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCAGGCAGAAAGGGTTT
R:
AGCGGGTTTGGGAACTGAAAA
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains