HsaINT1010495 @ hg38
Intron Retention
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450 family 2 subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr19:41122822-41124906:+
Coord C1 exon
chr19:41122822-41122963
Coord A exon
chr19:41122964-41124718
Coord C2 exon
chr19:41124719-41124906
Length
1755 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTTCCCGCTTCCTCTCCAGCCC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GAGAAGGAGGACCCACTGAGCCACTTCCACATGGATACCCTGCTGATGACCACACATAACCTGCTCTTTGGCGGCACCAAGACGGTGAGCACCACGCTGCACCACGCCTTCCTGGCACTCATGAAGTACCCAAAAGTTCAAG
Seq A exon
GTGAGGCCCACCCACACAGCAGCGTGGAGGTGCCCATGTGTTCCAGCCTCACCCCAGAGCAGGGAGCCACGGCCCCGCCTCCCAGGTCTGATATAGCCTCCTGCTGGCACCAGGATTCCACAGCCAAACCCACAAACCCACACGGAGGCCGATCCCACCACATGGCCCATGAGGTCCATGCAGCCTGCCCGAATCCCGACCCAGATCCCACCCGCTTAATTGTTGGTTTTTTTGTCTTTGTTTTGTTTTTTGGAGACGGAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGATCCGCTCACTGCAACCTCCCCCTCCCGAGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGCCTCCCAAGTAGCTGGGATTACACCACCACATCCAGCTAATTTTTCTATTTTTAGTAGAGACAGGGTTTCACCAAGTTGGCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTACACCCAGCTCTGCTTAGTTTTTTGTTTGTTTTTGAGACAGACTCACTCTGTCGCCCAGGCTGGAGTACAGTGCCGTAATTACAGCTCACTGCAGCCCCTTGGGCTCAAGCAATCTCCCCACCTCCGCCTTATCAATAGCTGGGAGTACAGGCGTGCACCACCACACTCAATACACTCAGCTAATTTTTTATTTTTTGTAGAGACAGGGTCTCGCTGTGTTGCCCTGGCTGGTCCCCAACTCCTGGGCTCAAGCAATCCTCTCACCTTGGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACCGCTCCTGCCTCCACCCGCTTAGTCTTGCTTTGTGCCGAGTGCGTCAACCACCACATGCGTCCACCTCCGGCTTCAGAGCCCTGCCCTGGAGCCCCAGCCATGTGCCTGCCAGGGAACCCTACCTCTCCCATGCAGCCTGGCCCACACACACAGCTCTGTCTGCTGCTCCACCTCCCCAAGCTCCATCTCTGGGTGTATCCCCTGCTCTGCCCCTGATCTCCAGCCCTCCCACACAGTCCACCCACTCGACCTACCGTCCAGCCAGTAGAGCCCCAAAACTGCTCCTGAAATCCCATCAGGTCCTGGATTCCAGGCCTCCCTGAAGCCCTGCCCACACAACCCAACACTCAGGCCCTTGCACAAGCCAAGCTTTCGCCCTCACTGACCCACTTCCTCCCAGACCCTGGCTAATTCTTTTTTTTTTTTCCTCTTCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAATCTTGCTCTGTCACCCAGGCTGAAGTGCAGTGGCCTGATCCCAGCTCACTGCAACCTCCTCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGGACCACAGGTGTGCGCCACCAAGCCCAGCTAATTTTTCTATTTTGTTGTGGAGATTGGGTTTCACCATGTTGCCCAGATGGTCTCAAACTCCTGGGCTCAAGCGATCCGTCCGCCTGGGCCTCCCAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGCTCTAGCTAATTCTCACGTGCGCCCCAGCAGTGGCGCCCCGCGCTGGGAGACTTTGACTAGACGCCTCCCCACACACGCACACACCTCTTATCAGCCTGGTTGCCCTGTCGCGCCCGCTGATACCCTCGACCCCGCTTCCCGCTTCCTCTCCAG
Seq C2 exon
CCCGCGTGCAGGAGGAGATCGACCTCGTGGTGGGACGCGCGCGGCTGCCGGCGCTGAAGGACCGCGCGGCCATGCCTTACACAGACGCGGTGATCCACGAGGTGCAGCGCTTTGCAGACATCATCCCCATGAACTTGCCGCACCGCGTCACTAGGGACACGGCCTTTCGCGGCTTCCTGATACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446:ENST00000331105:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=PU(54.4=98.4)
C2:
PF0006717=p450=FE(13.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGAGGACCCACTGAGC
R:
GGTATCAGGAAGCCGCGAAAG
Band lengths:
326-2081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains