HsaINT1028728 @ hg38
Intron Retention
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1 like [Source:HGNC Symbol;Acc:HGNC:24663]
Coordinates
chr1:174957457-174958182:+
Coord C1 exon
chr1:174957457-174957549
Coord A exon
chr1:174957550-174957890
Coord C2 exon
chr1:174957891-174958182
Length
341 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TAATATTTCTTTTCTTTCAGTTT
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAG
Seq A exon
GTATGAGAAATATGTTGCACCTATCAAAGTACCTTCTTTTTTGTTTTAAATGAGACTGAGTCTTGCCGTGTTGCCCAGGCTGGTCTTGAACACCTGGCCTCAAGCAATCCTCCCACTCCAGTCTCCCAAGTAGCTGGGATTACAGGCACGAGCCACCATTCCCAGCAAAGTACCTTTTTTTTTTTTTTTTTTTTTTTCTTAAAGCAGCAGTTGTGGCAAGTTCAATTCCCTCTGTTCTTCCTTGATTGATTTAGATGCTCTCTGATCATGCTAACTGTCCAGGTATGTTTTCATTTCAGGAGACTCCCAAATAGCCAACCATAATATTTCTTTTCTTTCAG
Seq C2 exon
TTTGTATATTTGTAGGTAACTCCAGCTGTTGCATTTATACTGGGAATCTTCATAAGAAGCTGAGAGAAAGAGAGGGGAAAAAGAAAGTGGCTTTCTACTTTCAAAAATGAAACAAAAAGGAAAAATGGCAAAGTACTGTTTTAGCTGTGCATGTCATATCCACAAAGACTTTTAGCAGGTGAACTGTTCCAAGACTGACACAAGGATGTTTCAAACTTGCCTCTGTCTGTAGAAAATGTTAAAAATACCAACTCACTTGGAAGGAAAAATAAAAATCACAAAGGTATATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061:ENST00000251507:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAAAGAATATCAGACAATGCGA
R:
TTTTATTTTTCCTTCCAAGTGAGTTG
Band lengths:
342-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains