MmuINT1029446 @ mm10
Intron Retention
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160257205-160257535:-
Coord C1 exon
chr1:160257443-160257535
Coord A exon
chr1:160257267-160257442
Coord C2 exon
chr1:160257205-160257266
Length
176 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TAACATTTCTTTTCTTTCAGTTT
3' ss Score
9.72
Exon sequences
Seq C1 exon
GTACCAACCAAAAAGCTGAAGAAATATGAAAAAGAATATCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGACCCAATGGATAGATACAAG
Seq A exon
GTATGGGGTACAAAGGACTTCACTTATCCTAGATAAGCAGTTGTGGTGAGTTCAGCTGCTTCTGTTCAACTCTGAACCACTCAGACATGGACAAGCTGACTATGTGTGTGTGTCTTCGTTTTCAACTGAGACAGTCAAAAGTCAAGTATTCAACTATAACATTTCTTTTCTTTCAG
Seq C2 exon
TTTGTATATTTATAGGTAACTCCAGCTGTTGAATTTATACTGGGAATCTTCATGAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721:ENSMUST00000028049:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.454 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAACCAAAAAGCTGAAGA
R:
TCCCAGTATAAATTCAACAGCTGGA
Band lengths:
138-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types