GgaINT0035422 @ galGal4
Intron Retention
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7099196-7106427:-
Coord C1 exon
chr8:7106335-7106427
Coord A exon
chr8:7099307-7106334
Coord C2 exon
chr8:7099196-7099306
Length
7028 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TTGTTCCTTTCTTTCTGCAGAGG
3' ss Score
11.35
Exon sequences
Seq C1 exon
GTGCCAACAAAAAAACTGAAGAAATATGAGAGAGAGTACCAAACAATGCGAGAGAGTCAGCTGCAGCAGGAAGATCCTATGGACAGATACAAG
Seq A exon
GTACGGGAGATGCTGTGTGGGAACCTCTTTCATTTGCTGAATTACATGGGGAGCGGTGCAGTCCCAGCCGTTAGGCAGAGGTCTGCGTCCCACGCTCACCTCTCTAGGATTTGCTGATGCAGATTTTAGGGAATTAAAATGGCAGGCAAAACTCATTCCTTCTCTTGAACAAGCACTGTGAACACTCAGACTTAGTGTTTTTGCAGGGATGTTTGAATCATGATTTGTTACTCTCGAGACATCTTCAAGTAGCCACATATAATATTTTTCTTCTTTCAGTTTATATGTTTGTAGGTAACTCTCCTGCTGTTGCACTTTTACGGGAGATCTTCATGAGATGCAGAAACAAAGGGTGATTCTCAGCTACAGACACAGAAAGGAGAAAATACACATTGTTCTAGCCCAAGCTGTGTGCAGTAACATCCACAGAGACTTCGGGAAGATGCATTCTTCCTTGACTTGATATGTCCTTGTTTCTCAACTCTGTTTATAGCAAATGTTAGTAATTTTTTGTCAGTGTAATGACTAGTACAGTGGGACCCAGTGTTCTCTTGGGGTCCTGGCATACTACTGCAATAGGATTAATAGTCATAAGTAGCATGCTTTAGAGCAGCAGAAGAATAAAGCTTCAGTTATTAATATGGTAGCTCAATAGTTTACAAAAATATAGTCCTTGATAATTTTGGATCAGCGTTGTTTCCAATATGTTTGTTTTATTGTTACTGCTACGTTCTGTTGCCATAGGTTTTTGTGTGATGGAGGCTCTGCCTCTAGGTTTATATTTTACACAGTGTTCAGGATTCTTTTCTTGCTTACCCAGTATTAAAAAGAGGTTAGTGTTCCTTGGGAAAAGCTGCCAAAGATGAAGCACTTTACTGCATATTGCCCAGTTTTGCTGGGAACTGACATTGCTTTTATACATCTGTGTTGTTTTCCTGCCGTTCTTCATTGTGCCTTATTATGTGTTGATACGGAGTCTGCCCGGAGTGTGGGCTAGTGAATAATTACAGGTGCTGCCACAGGTTTACATGGCATGTAAGCATAAGGAAAGTGCACCGTGTTCGTAAAACCACAGTGTGAAAGACTGTGCTGTAATCCATAAATACGATGAGATAGAGTTACACTTACAAAGAAAGTAAAACTGACTTTAAAAAAAATACTTGCTTCTGAAAAATAATGTTTTAAGTGTAGTTCTTTTATGTCAAAGAGTGAATTGAGAACTGAGAACTGGGGCTGCCAAGAGCTGCTGATGATAAGAACATTGAGAAAAAAACACAACTTGCTGCTGATGAACTTCTTTTCCAGTGATTTGCTTATACTACTGTGGAATTAAAGTGATACTTAAAAGCCAAAGAAGGCTTCTTTAAAGCTCTGTGGAAACTGGTTAATCCTGGGTGATGGACGGTGAAGAACATCATCTCCAAACTGCAAATGAGGATATAGAAAGTGGCTCTGTGGTCACTGCCTATGTGAGTCACTGTCATGGCCAAGAGCACAGCACAGGTGTTGGCTTGCACTTGCCCAGCTGCCTGTGTTGGGTCTGCTCTTCTTACAGATGATGTGCTTAGGTAGGCTCCATAACTTGTTGGCTGCACATTAAATGCAAAGTTCAGAGTTATTCTTCAGCTGATCGATGTGATGGAGAAATGCTTGTCAGTGCTGTCTGTCCCTTGTCTTGCTTGTTTGATTTTTTATTTGCGTATCAGGCTGAGGTTGGTGAGAATTGACATTTCAAGAGAGTTTCCAAAGGGCAAGGGGAAATGCAAGCTGTGGACCCTTGTGGACAGAAAGTGGAGAGCCAGCTTTGCTTATCCCTTAAGTGATCACAGAGCAGCCCTTGTGTTTTGAAATGCATTTGGGTTTGGCAGTGCCTGGCTGGGCTTGGTTAGGGAAACACCTGAGACAACGCTGCTGAAAAGACAACATATTGCCTGAGTACAGCCTTGCTGCTAGTTCCTCTGGCCTGTGTGGGCTCTACCCTAGAGGTCCACTTTGTAATCTTCCAGAACAGCATGTTGCTTTGGTTTACTTACCTAGGAAGAGGGGACTGCTTGGGCTCATGGGTGCCACTTAGAATATTCCTCTTAGAGGTTGAGAAGGACACAGGCCTGCAGTCTCTTGGCAGTTTTTAGTTAGAATTGTTACAGTTTTTGCTGTTTGCAGCATGTGTTGAGGTTTTTGTTGCCAACAGAGATTTGTCAGGACCAATGGGATGTGCTCAGTGATGGTGTTGCATTGGCGCTCCTGACTTGCAGGGATGAAGGATGTGTTGAGTAAGACCCCTCCCTGTGAGCAGGATGGTGCTGGGGAGTGGATGGGAGCAGCACCCCTTTGATGGCAGCAGGGCTTCAGCCAAGCTGCAGTCTCTTCCTGCTGTCCCCACTGCCCTGTGAGCAGCAGGGAGAGAGCTCGCAGGAGGTGATGCAGCTCTTGCCATTGCTGAGGAGCAGTCTGACTTCAGGGAGAGAGACCGAGGCCCATGGAGTGCACGACAGCTTCTTCCTGTCCTGGTATTCCTGAGCACAGTAACTCTGGGGCTGAGGAGCCTCCTCTGCAATGCCAGGAGAGAGATGCCTCATGCACAAGGGCAGCTGGACGCATCCAGCAGGGTGCTCCTGCAGAGCCACCACCCCCACGCTCCCCATAAACTCCAGAAAGGGGCTGTTTTTGCCATGCCACGCCTGCCATTAACCAGTCACATTTCCTTGACAGGTTGAGTTCACATGTCACAATAAGATGTGCTGTATGCCACAGGAGCTCCTGCTCAGCTTGTATTTCGTGTGCTGATTGTGATAGAATTGCTTTACCAAAAGAGCAGTATTAACAGGTGCCACATGTTCTGATGTTTATTTCCTTCTGTATTTACAAGTATTATGTAGGAAAAGTATATTTTTTATGGACTCGTTTTCATGGTCAGGTAATTTCATCTTTCATTATTCATAAGAAGTCGTCATTCATAATGCTGTGGGGTTCTAAAAGGGTGCAAAAGTAAACACATTCTAAATTGCTGTTTGCCACCAAATTTCGTACTTTTTAGTTAAAATAAAGAACAAGTTGCCTATAGGAGTCAGTGAAAAAAGTGACCTATGTGTGCAGAAAAAAAAATAGCAGTAATGGTTCAGATTGATATTTTCTGTATATTGTTACAGGTTTTTTTTCTGTGTTTAAGAACACCTCATGTAACAGGGCTGTGTTTGACTTGCAAAGAAACTGCTAAAGTTGGGCTCAGCAGCCTTTTGTTTTAAATAAAAGGGAGATATCCAGATAAAGTTGGCTGGACCCTGCTTGTCCCCAAGGTTTTGTTCTGAAGGTAGAAATGCATTTTCCTCCATGGACTTCATTGTGTGACAGAGATGTTGTCTATGAATAAATGTGTGATTTGGACATAATAGCTTTTTCTGTCTTTGAAGTGGAAGCGTTTTTTATTCAGAGTAACTGAATGGTAACTGTCATGTGGAAAAACATAAGGTAACTCTGGCTGGTATTTCTTGTTTGTGGGTTGGTTTGGTTTTTCTTGTTTATTTGTTTTTGTTCACTGTGTTTGTTTGTTAAAAGTGCTGGTGCCCTCCTGGGAACTTATTTTCACAGTCAACAAGGAGAGACACAAACCACTTCCAGGAGCCTCTGAGTTGCTTCCCACGAAAGGTTTTCCTGGGTAGTGGTGTAAAAGCCTTTTGGTTTCTAGATGGTGTTTCGCAGGGTTTTCCTTTAGAGCCGCCCTTGCAATCCAGAGCTCTTCCCAATGGGCTTCTGAAGACTTCAGTTTGATTCCATCAGGAAAGTGAATTGTAAGCAGTGTTTTCATTCCATCACTGAGGACCGACCTGTTCTTGCCAAAGATCTGTGGTTTGGGTGTTTGCTTACCCAAAAATGTGACACTGAATTGCTTAACAGGGTTTGTGACTCGTTACACCCAGCTTGAGTAGCAGCATAGAGAGGATGCATCATCATCACTAATCGTGGCTGGTATTGCTCCTTTGTGCTGGCTGTTGGGAGCAGAGGGTGGAGTTTCAGCCCTTCAGTCTCCCTGAGCTGAGGCTTGCCTCCTGCTTTCAAGTTTGCCTTCTTTCCATCAAGTGTGTGATGGAAGCTGGAGATTATCCTCTTTAAAAATAGGAACCAAAGACCCACTGAAGAATTGGCAACTTTTTTTTTTTCTTCTGATTTTGCTGGTATTAAAAATATTTTATATCCTGTTTTCACTGTCTTTACACCAATGGTTGAAAGCAGTATTTGGTCTGTGACTTTGCTGGAGGTAAGTTTCTTTGTGTTTGTTCGTACCAGCAATGTTTGTCCCTTTTGGAAATGCAGTATCCTCCTTTTAAAAGAGTTCACAGGATGCTTTTTGTAACAGGAAGGAGGAATTTAGGAAAGAGGGAATATCATGTTTTAGTGACTGTAGGAGCTGAGTAATGCTGATGAGAAGGAAATTGTTGGCATGGTCAGTAAATTATTAGCAGCGTGCAAAGAAAGGGCAGGAAGCTGGCTGTTCATACCAAAGACATCTAGCAGGTCAGACGAGTTGGCTCATCCAGGTTACAAAATACTGTGAGCCCTGCTGGAACGAACCAGCTCCGTCTATTGAACTTTATTCCATTCAGCTGGTATTTTATAAAGCCCGTATATATTTCAGAGCCATCAGAAGGCGTCTGCTAGATACAAAAAGCACCATTTGTTATTTTTATCTTCATTGTATAACATTAGGTTTTATTTAGACTTAAGCAGATGAGAGTTTCCTCCTGAGGAAGGAGGCAGTTTTTCACTGCTAGATCAGGGGGGAGGAGCTGGAAAAGACAAACCATCTAATCGTGCACACTGCCCTGTATGGAGGAACAGTAAAGGTGGCCCAATGAGGGACTCAGCTCTTAGCTATTGACTGGATGCCCAAGGTAAGAGATGTTTAACTTACTAAAGATGTCGATTGCAGTTTAAGAGGAGGATAGCGCATTTCCAGCCACGCAGCTTGCTTTACCACTTGTCTGCAAATGCAAAGCAGGAACTTCAGACTTCACATTGTGCAGCTTGCTTTGCGGACACCAAAGCTTTTGGCGAGAGCATAGCAAAAATGTTACAGCAAACTTCTTTCTGGGTTATTCTTGCTATAAGCAACATCCCTATGAAAAGGTATTGGTGCTGTAGCATCTGACAGCAATACAGTCCTAATTTTGTCCCAGTTTTGAAGTGAGCTGAAGTGACTGTTAACTGACAAACACTGACAAACCTGTGTCTGTACAAACTGACTTCTCTTGGATGGTCTGAATACGTACAGAAGTAAAGATGCATTGGAGCTTCTTATTACTGAAGACAGCAATTTGGTTTTGTGCTTTAAAGTATGTGTTATCCTTATAGGATAATTTTACTTCTAAAAATTCCCTGTCTCAAGCAGAACACGATGTGATTAAAATTTAAAAAATCCCCTCTCAGCAATGGTTATTTTAACTGTGAGAGACACAAATATTTAACAGTTCCTATTTAAAAAAGAAAGCAACAAAGTTATTTAAAGTACTGTCTTTCGGAGAGGAAACAGGCTGACTTTCCTGTACAGGGCAGTGCACAACCCACTTGCACAATAAGGTCACACTAAGGAGGGTGTATTTTCTTCCTGCCACAGAGGAAGCTAACACAAAGAGGAGACCTTTTTTAGGATACTCTTAGAGCTCTAGCTGTCCTTCTTTGCTTAAGACAAGCATGCAGATTTCTTTTACAGCAGCTGAAAGCAGTGGTTTCACTGTGGTGAGCTTTGGAAGGACCACAGTATGTGAGCATAGCTGTTGAGCAGGAGGAAGTGAAGGCTGGTGAATAATACACTTCTGCAAAGAAAACACATCATGTAGAAAAGCATTCACTGAGCAACCCTTGGAAAACGTTGCTGATCTATATTCCCTTTTACTGTTTTTCTTTGGAGAGCATACTTACCTTTTGAGCATCCTTTTTGTGATGTTGCTGTGTAGGTTACTGTTTGTCCACCTACAGGTTTCCATGTGAACTTGTCATTTTCATAATGCACAAATTCCCTCTACGGTCTCTTTTGCAATCACTGTGTGACCAAAGGCCAGCAAGTTCTGTACTTCTCACAAAATCTGTTTGAGGAGGGGAGCTGTATTTGTCTCAACTGGCTGTGTCTTCTGAAGGCAGAGGGTGTGGTGTGGACTTCTGCAAGCCCACCAATCCACAAATACCTTCTGCGTATAATTCTGCTTGTCAGCTCTAGAAGAACAGTCACTTAAACTGATTTTTAAGAAACATGAATTTGTAATTTTTTTCCCCGTGCATTTACCCTCATTAGTGCTCTACATCGTTAGTTCCTCCTTTGTGGGATGGGTCTGGTTGGGCTGAGGGGAGCATCAGGGCCTGCAGTCTCAGTTCTACATTTTGTGTTGCCATGCATCACCTGCAGAATATGTTCTGGACCTGTGCTCAGGGAGTGATACCTCCTCTTCATCTGGTGCTTTTTCTCAGCAGGAACTTTTAAAACGTACCTGTTGTCACTGGTGCAGGTTACAGAGAGAGCATGCAAATGGAGGTACAGGTTATGGGCTCTATACTGGTCCCACAGAGGATGAGCAGATGGCACAACGTCATCTACAAATGGACTGCTTTTATGAATTAACTGCAGACAAACTTCTGTAAAATGGAGCAGAGAAAAGTTTTGTTCTTTTGATTGGAAACTTTATGATGAGTATTTCCCTGTCTACTGCTGCCAGTGGGATTTTATCTGCCTTATTTCTTTTGATGATGGGCAAGCAGAAACGAAGCATTTTTACAGTGAGGACTGTGTTTACTTTGGGCAGAGAAACCCTACAATCAGTGTGTCACTTAGTGCGACTCAAACATATCCATTGGGATGTATGTGGAATCGCTGCATTTGCACTGCTGGCTTAATTCACTGTTGTTTCCCAGAGCAGCAGTCCTGTCTTAATGTGCACTTCTGCCTTCTCGGTGCTTTATACACACAATATATTCGCTTATCACTCGTTAATATTGATAAGAATTAACATCTTCTTCTGGTTGTTCCTTTCTTTCTGCAG
Seq C2 exon
AGGGAAAACCGCAGGCTCCAAGAAGCTAGCATGAGGCTGGAGCAGGAGAATGATGACCTTGCCCATGAGCTTGTAACAAGCAAAATTGCCTTACGGAATGACCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578:ENSGALT00000007287:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]