MmuINT0130795 @ mm9
Intron Retention
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162177590-162187666:-
Coord C1 exon
chr1:162187574-162187666
Coord A exon
chr1:162177701-162187573
Coord C2 exon
chr1:162177590-162177700
Length
9873 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTCTCGCTCTTTTTCTTCAGAGG
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTACCAACCAAAAAGCTGAAGAAATATGAAAAAGAATATCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGACCCAATGGATAGATACAAG
Seq A exon
GTATGGGGTACAAAGGACTTCACTTATCCTAGATAAGCAGTTGTGGTGAGTTCAGCTGCTTCTGTTCAACTCTGAACCACTCAGACATGGACAAGCTGACTATGTGTGTGTGTCTTCGTTTTCAACTGAGACAGTCAAAAGTCAAGTATTCAACTATAACATTTCTTTTCTTTCAGTTTGTATATTTATAGGTAACTCCAGCTGTTGAATTTATACTGGGAATCTTCATGAGAAGCTGAAAGAAAGGGAAAAAGAAAGTGGCTTTCTGCTTTCAAAATTGAGGAAAATAAACCAGAAAATGCCAAAAGTACTGTTTTAGCAGTGCACGTTCACTTCCACAGAGACTTTTAGGTGGGACTGTTCCAAGACACTCTCGAGGATATTGCAAACTTGTCCCTGACTATAGCACATGTTAAAAATACAAATTTAGAAGAAAAAATAAAAACCAAATGGTGTATCAAGCACAGTAATGTGATTTCCACAAACAAATCATAGGTAATAGTGATATTTGCATGCAGTTTGAGAATCAAAATTATCTCATTCATAGCTTCATTAGTTCAGGTCTATACATTTATATTGCGTAAATGGTCATGTCAAGCCCAGATTGCCATGTGGCAATGCGATGGGATAGGAGGATCATTCATGTCCAGGAGTTTAAAACCAGGAGCATAGTGAGACCCCATCTAAAAACACAACATAAAACGACGACAAATGTCTCATGGAGCCCAAAGAAGCTGTACTACAACTGAACTGTAACTGCCTTGCACCCTTTTTCTGTTAAAGCAGGCATGTATAAACACTTATAAACAATAACATTATTTGTAAAGTTTCCACTGAGATAAAATTAAACTTTTAAAAATCGGTGTTTTAAGTTCTAGTATTGTAGGGTATGGCTCTTTGTTTGGTGTGGGGTTTCACTTTGACAGGGTCTTGCTCTGTATTCCAGGCTGATCTTTATCCAGACCTGTGCCACCATCCCCATGCTGTGGTAACTTTTATCTGCACATGTCACATGCCCTTTATCGCTATTTTTGTATTATTATAGTTTTCTAATATATTCTGTAATTAATATTTCTGTAACTGTTTTATAATGTGTAGGTTCCAGCGATCTACTTGGCAAACTCACAGTCTTCAAGTTATAATTACATTTCAGGGTAATAATTGCCAACATAATTCAGGCCATGAGCAGATTTTTTGATCCTTTAGATATAGGAAAATCTGGTGTAAGAAGTAATGAAGGTCTGGAGAGATGGCTCTGTCTGGTGAAGGCACACGTTTCCAAGCTGATGACCTGACTTCCATTTCCTGGACCCACAAGTGGAAGGAGAAAGCCCTGACCTTTATACTCACACTGTGGCATATGTGTGCCCACATATAACACACAAAGACATGCCAGCTGGCTGTGGTGGCACATGTCTTTAATCTCAGCACTCCAGAGGCAGAGGCAGGTGGATCTGAGTTCAGGGCCAGCCTGGTCTTCAGAGTGAGTTCCAGAACAGCTAAGGCTACTCAGAGAAAGAAGATCTTGAAGACACTGAAAGCTCACACCTGTTCAGTAACAATTCCTTCTTTACCATTGGAACCCATATTGCATAAATGGTCATGTCAAGCCCAGATTGCCATGTGGCAAGAGTGTTGGGAAGACTGTGAGTATTTAAAAACAAAAACAAAACCCAGAAATGTCATACAATAAGCTGTTTCAATTTGGTGCTATTATTTCTCCCACATCTGATGATATTGAAGAAGGGAAATTGCAGAAAAGTACAGATTGGCATGGAAGAGCTAAGAGTGCATAGGTTACTCTGCTCTCAACACATGTGCTTTTTGCTGGATAAATCTAAACAAGGGCCTAGGGGTATACCTCAGGCATTGCCTAGTATGTATGGGATCATAGGTTCAGTGCACAGGAGCTTGCAACTTCATGCCTCCCATCTGACCATGCTCTCTGTGCCCATTGCATTGTCATTTGATATTGCTGGACTCACTTACATGCAACACTTCAGTTTCAAACCAGGAATAAAGAGAAGAAATGGTGTTGGTATAAATTTGTTTTAAAATTCTACGCATGGTGAAATGTTCAGCAATTGGGTAGTGGTGATGTCTATACAGTTTCATGTAACTGAATTGAATACTAAAGTATGATTTTTGTCAGACATGGTGATAAATGTAATGCTAGCACACAAGAGGCTAAGGGAGAAGGGTGAAGTGTTTGAAGCCAGCTTGAGCTACATATTGAGACCATGACTCAGCAATCCCTCTTTAAAAATCACATGATTTAATAGCATGTAAGTTACATCGAAACAAGACAAATGTTCAAGAATATTGGCCACCCTCTTTCTCTTCTTTCTCTGTCTGTCTGTCTGTCTGTCTGACTGTCTGTCTGACTGACTGTCTCTCTCCCTCTTTTAGTTTTGTTTGTGTGTGTGCTTGTGTGTGTGCACACACATGTATATGCAGATGCATGCACAAGTGTATGCAAATGGGCATGGAGGCACAAATGTCAATGTCTGGTATCTTCCTCAGTTACTCTCTACCTCAGCTTTGGAGGTAGAACTCAGTTTTGGAGGTCACTAATTTCGCTCACCCATAGCTGCTCTGTTGCTGTTTGTTGTTTGCTTCCTCTTAATGTAGGTGCCAGAGACTTAAACTCAGGCCTTGAGGTTTGCATGGCAAGCACTCTACCAGCGGAGCCATTTCTCCAGCCCTACTCTTTCTCTGTGAGACAGTGTCTCCCATGTCATAGGCTGGGCTTGAACTCACTGTGTAGCTGAAGATTATTATGTCAGACATCTGAACCTCTTGCCTCTACTTCCTGAGTGCTGAGACTACAAGAATAAACCACCATGCCCAGTTTATATGATGCTGGGAACTGAACTTAGAATCCAGGGATTCTTGTGTGCTAGGTAAGCACTCTGCCATCTGAGCTGCATCCCCGGTCCTTCCATCATTTCTTTCGTGAGCCACAAGTAACTTGTATCAAAATACAATACTCACGTAGAAGTCATACTTGTGCAAATTTTGTCAAATTCAAGCTAACTAAAGACTTTTGATTATTAATTTTCAGGTAGAATATTTGGAGTCCCCCCCCTCCTCCCCCCACATATATACACTGCCTAATCCAGCATCAAATTTGTACTGAGATGCAGAGAACCCTCAAAAAACTGCTTACAGCCTTTAGTGGAGTCTCTTTCTGCTTAATTCCAGAAGATTCCAAAAGAGAAAAAGGAAACTTTCCAGGAAATGAGTATTCAGTATTATTTTAAAACCTTTTTTATCTTCCTCCTTAACCTGATCAAATGTATGCAATATTGGTTTTTTATCTGATTTTTGGTTTGTAAATTTGATTGAGTTCAAATGGGGTGAAATATGAGCTATAGATGTGGCTAATGATGTCCCCCAAATATACATTTGTGAATAGGTATATCTATGTTATATCACTTCACTTATCAGTGAGCAAACCCACCAAAGCATATAAGAATGTTAGGGACCAGTATCCTTCTCATACACTGAGTACATGGGTCACTTTCAATGTGCGGAAGAGCTTCAGTGGTCTGGCCAGCTGCTGAGGCTTCTAGAGAAGTGCAGCCTTTTACAGAAGGATGCACTGTTTCTCTTGTTTAATTAAGACATGCTGATGCTAATGCAGGTCAGGCCTTCGAAAACACAAGTAATTAATTAAATGCAGTGAATTTCCCAAAGCAGAGTAAAAGCTACCTGTTCTGTAGGGAAAGATCCTGGGAAGAGCGTGGAATGCTTAAACTCTGTTGGGCTTAAGATATGTATAGTATCATAAATATGTAATTTAGAGCTTAGCTATCTAGCCATTGTCAATATGGTTAAATGTAGAATATTTAACTGCCTTTGTGAGCTTAATTAGGTATAGTAAATTTTTTAAAGCCAAAACATAAGTCTAATCAGTAAGTCAGTGGTGAAAGGCTTGCCTAGCAGGAAGCCCCTGGGTTTGGTCCCCAGAACCACAGAACCAATCCAAATCTGAACAGAATATAATTCAGATAGAAATGATTCTTCTGGGCTGGAGAGATAGCTCAGAGGTTAAGCACACTGCTTGCTTTTCCAGTGGTCTTGAGTTAAATTCCCAGCAACCCCATGGTGGCTCATGACTATCTATAATGAGCTCTGGCTCCCTCTTCTGGCCTGCAGGTATACATGCAGGTAGAACACTATACATAAATAAGTAAATGTTTAAAAAAACAAAAACAAACAAACAAAACCCTAGGGACCCAGTATTTCTAAATGACGTGACTTTACGGGGGGGGGGGGGGGGAAGAAGTGATTCTTCTAATGAGTTCTGTAAATCATACTAAGTTTTTCTTTCTTACCTGAGAAAGAGAAGGAGGTAGCTCTCATGTTGTTTTTTACATTAGTGTGTTAGGCTTTCCTTACTAATGGATGTCAAAAGACATAAATTTACTGTGGAAAAAATGTTGTTCTTCCATTGAAAAGTATCATTATCTGTGCTATTTCTTCCTTACCATAGAGACTGGTATTGGCTTTGGGAATACCTATCCTGTCAACTAAGGTGCTAATGAGAAATAACAGACATGAAGATGGTTTCTGTTTGTCTGCAATAAACAGAATTTCCTTATCATGATGTTAAATGGCAGAAGGTCCCGAATTCTTCCCAGCCTGGAAACACTTCCCTGTTGCTGTACCTGCTGAAAAGTGTGGCTAAGGAGTCTGCCCGTGACTCAGTTACTTCACGCGTACAGCTCCTGAAAGTGCGAACACAAGGGAATTTTTTAGTCTGTTTATCCTTGATTTCCCCCATCTTCCAATGTTTTTCTTAGGAACTTTTTATTCCTGTTATTGTTGAGAAAAAAAGTATGACGATAATGTTTCTATATCATCTGTAACTGATTACTCTTTGTTTTTTTTTTATTTTATTTTTGAAGATATGGTCTCGCATTAACACAGGGTGACCTGAAAATCTATGCACTAGAATAGAAAGCCACAGTAGTTTGTGGACCAAATCTGGATGATTGGTGTATTGTGTTTTTGTTTGCTCATGACTGCTTCTGCACAGTGACTGTCATGTCAGCATGGAAACGTGGTCTGTGGTGCTGAAATGTTTCATCTCCTTTGCTAAAATATCACCTAAGGTTGCTGGAGTTTTGTTTTTAGTATAAAAAGAAATGCAGTGTGTTTTGCTACCTGTAGTTATTTTGTTTTTCGTTTGATACTTTAAATGTCTAAATTTCCATAAGAAAGATGAATTGAATGTTATGTGAAAGGAAGAAAGCATCCATTGGGGTCCAATATCCAGAAGTTTCTCTCAACTCTTCATTTATAGGTGAAATCAATATCTAAGCACTTCATCTGTAGCCATTTATCTTTGTAGATCAAAAAACTGTCTTCTGAAAATCTGAGGATGATGATCAACTCTTTTTAAAAGAAGCATCCAAAAGACAGTGTGGAAAAGTTGGTGTTTTGTTGCTTATAAAATTGTGTTGGGTCTCTGAGAGAAATGTTTTCTCCTGACCCTTAAATATTTTTATATGTGCCAAGAACTCACCATAGCAGCAGGAAACACACCCAAGACTGTGTGTGAGGTTTATGGAGCCACTGCCTCTGCGTCACTTTTTCCCTGAAAGCTGAGTTCATTTTCTTCTCCTTGCCAGTTAGCATGTCTCTGGTTTCTCCTTGACATCCTTTAGATGGCTTCACCAAAACTTCAGCCTCCAGAAACAAACAGGAACTAGGCATAGTTTTCTATTTGCTTTCCCTGTTTAGCAATTTCAGAAACCAGCTATTCTGAAAGGCTTCTGATACTGTCCTATGAGGAACCCCCTGCCCCCAGCATTAACACAAAATCAACAAGTCATCTGTAGTTGCTAATGTTTCCACACACGGCATTTTCATTTTCATAAGTCATGCAAACTGCAAATAGCAGTGTGGGAAGGGAGGAGTTTTCAAGCCTGAGTCTTCTGCGTTGAGACTTGCCCACTTGCCTCAAGTATACTCTTCCATTGAATGTTTGCAGTCACGGAGAGAACTTCACTGAGTGACATTCTGGACAAACAGCGAAGTATTAACAAGTGTCTGTTTCTGTTGCTGCTGTTTCCTAAATGTATTAGTAGGTGTGAAATTTCACTGGATATTCCTTTTTTATTTTTTTCAATTGTCTTTGTACCTATGGTTGAAAACAGTAGTTGGTCTTTGACCTTTGAGGAGGTAAGTTGATTTTCTTTGATCTGTGTATGTCTGTATTCATGTCTGTCTCTGAAAAAAAAAAATGCAGTATTATCCTCCTAATAGTAACCAGACTTCCCCAGCTATGCAAGTCCTGTGCAAGAAGGGAGGGAGGGGCTGAGGAAAGTTGTGTGCTTTTGTTCAAATGGTATCAGCTGTGAGAGATGGTGTGGGTTTCAGAAGTGTGATGTGAGGTTATGTAACCTGTGCCTCCCGGAATCCTTTCTGATAGCTAAGAGGAGCTATCTGCCTGATTTGTTTCCAGGCTCTGGGATGTTGGCACTTCTGCCTTCACTAACATCCACCGTGTGGGATCTCCACTGGCTAAAGTCATCCAGCTGACTTCACTGTCTCTCCCTTAGGCAGAGCAGAAGCTTGGTTTGAAACGAGGCAAGCCTATCAAACCTAACTCTGTCCCCCGTGTAAAGTGAAGGAAAACTTTTTTTTTTTAATCAAAGTGGTTAGTTCTGAAAATAGTTTTGGCTCCTCAGGGAAGCCTGGAAAAGACACCTAAGCATGGTAATGTGTTTTAATCCTTGAACAAGTTCATCACAGGAGATCTCAGCCTCAGCAACAGAGGCTCACAAGATACCTCATTGCCCAGGATTGCCCACTGGAGGATGATACTGCATTTTTGACCCCATAGCTTGCTTTCCCCCATCTGTGAGTGCAGAGCAGACATCTGACACTTCCCACTGCTTGCTTTGCAGACACCAAACTGGAGCTGCTTGCTCAAGCAAAAGCCAGTAGGCATGCCTCGTGGGTCAGTCTGCTCGTTAGGGACTCTCAGATACTTAGGTCTTCACAGAGCCCTCCTAGTTCTTACCCCTTTAGCTGTGCATCTGTGATGAAGGGTGAGAAGTCTCCTATTAGAATTTCAGCTGTGCTCACTCTCAGTTTGCTCTGTAACACATAATCCATCCGACCTGTGCTTCTAATCTAGAGTGAAGTTGCTCCCTGGTAATCCTTCTAAATACTTGAATGAGTAACTTTCCCATGGACATCATATGACTACCTTCGGGTTAACTCAGTTCTACACACAGCAGGAACCTGAAAAACTGGTAGCGTTTTAATATGGTGTAAATAATAGTTGAGGAAGCATTTTGTAGCTTTGAATTCTGTGAGCACAGACTCAGTAGAAGCAGCAACCCAGGAACCAGGTGGCAGAGGAGCCTTGTCTTAGCCTCTCACACGGATTTATCAAGAAATGAGAAGAATCTCTTCCCCACCCAAGCAGTCTGCCTTGTGAAGTATGTGGTGTTGAGATTGTGCTGGCTTACTGTTGTTTCCTGGCAAGGAGACCATTGATGGGAGAGGTTTCTGAAATGTGTGTTTTAAAGAGTCTTAAGTTTTCTGCTGCAAGCGCATGAGTTGTTTCTATGGAGAAGTAATAGATGTCTCACAAATACAAACTCTCCAGCCCCTGGTAGAAATTGGGCTTTGTCAGTGAAGGCTCAGCCTCAGGAGGCTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCCTTTTCTTTTTCTTTTTCCTTTTCTTTTTCTTTCTTTCTTATTTTTTTTTTTGATGTTGTTGTTTTTTCGGTTTTTTGGTTTCTTTGATACAGAGTTTCTCTGTATTGCTCTGGCTGTCCTGTAACTCACTCTTTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGTGCCACCACCTCCCGGCAGGAGGCTTTGTTTCTATATATTACCCATGAACTTCAGTGGGAGGTTAGAGCTGGGGGAAACTATGTCCTAGACTTTTAACAAATACAAGTTGCCCTACCAATCCAGGGAGCACTGTCTTTTCAGGAACACATAGGACAAAGAAGATTTTCTCAGGTGCAATGATGTGCGTTGGTCACTAGAAAAGGCCCAGTGTGTTTTGTGTAGAAAATAACCTTGTTTAATAGTAGACTTAGATCTTTTTTCTTTCTTTCCTTCTTACTTACTTTCTTTTTCACTTCTACACATTTTAGTGTTTCATCCCTTCTAGTAGAATCGAAATTCTGAATTGAAGGGGTTTAACAAAAGTTTTTTTAAAAAAATTCTGTTGTAACTGTATTATATTCCTTGTGGAAAACCTGAGAACATTTCAAGAAGAGAAAGGTAATGTCAAATCAAACCCACTGCCTACAGCTAATATCTGTTGTTCATATTGTTATAAAAATGGGATTTTCTAGCTATTATTAAATTTTTTCTCTAATATGTATTAATATATGGAATCCTATCATGGATTTTCTTAAAAGTATTTGGAATTGTAACTTTTGTGTATTAGTAGGTCTGTTTTCAAGAAGCTTTTTTTATATCCCTCAACTGTCTCAGTCTATTTTCAGGGTGTAGACTTCCCTTTACCTTCTCTGCTGATCTTCCCTGCTTATGAGTCCTTGGCTTCCATGGAGCCTCAGACTTTGCTCTTAGATCTGTTTTATAGACTTTCTGCAGAAATGGAGATGACATTGGGATCTTAGAGATTTCTTTCCCTATGAAACTAACACCAGGCTGTTCTACAGCAGATAATCCCCACCTCTCGTATGCACTGACACACCATCTTCCAGAACATGTATTTGTCTTGTGTGTTTTTGCCAGTGTTTTGCCTGGGTTTGCCACCCTTTTAGAAAATACTGTCAGGAGTGTAGATCTAAAACAAAATAGAGCTTGTTACACTGAAATTCATCCTATCAGCCCCCTTTTGGGTCTCCTGCAATCAACAGTAGCAAAGAAAACATATCTGGTAGTGTGCAATAGAAAGCACTAAACCACTGCTCTTTGGAAGTGGGCACACACACTCAGTTCACAATGGCTGGTAAAGAGTGCCTGGATTCATTCATCTTAACTTTTAAACTGTTCTTGAGAGTTCAGAGCATTTGGGGGGGGGGTGGGGACCACTGCTGTATTTTACCCAGAATCTTTTAATCTGAAGTTTGAATAAAACAGAATAAACATTTAGAACATACATTTCAGGGCCCATTGCTCTCAGTCACACAAAAACATATTTACAGAAGTAAATATATCTTAAAGAATAAGACAATCAGCTGGTTGCAGAATCACCAATTCACATGTCTTCTTTCTTTCTTCTTTTTGAACCCTATATAATTTGATTTTAGGTTTAGTGTTTTTAAACAGCTTCAATTAATTTGGTCCCTCATCTTGGAGAAGCAATTTCAGAAAAAAATTACCAGCATCCTCCCTGCTGTGTCTTGTAGACTGTTTCTCTAGAGGTCCAACTGTGCATGTTTCAAAAAAGAATTGTTGGCATCTGTGTTCTAGGTCTATGTGAAAACCTCCTGTAACTGGGAGCACATCTGGAAATTCTGCTCTTTGTGGCGCGTCTTACCTAACAAAGTTCTGTCTGGAGGGTCTAGGGGATGTTTGTTAAGCTTCACTGGCAGAGAACTGCATCTGCACCGCTGGCTAAACTCACTGTTGTTTCCCAGACAGCAGCTGCTTCCTGTGCCACTGTGCCCGCCCTTCTACACCTCTGAGAGTTCACTTGTTGTCGCTTGTTTCTCCCCTGCCACTTTCTACTCCTACCTGCGGGCTAATGTGGACTTCTGGCTCTCGCTCTTTTTCTTCAG
Seq C2 exon
AGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAAAATGATGACCTTGCCCATGAACTAGTGACAAGCAAAATTGCTCTGCGGAATGACTTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-Rabgap1l:NM_001038621:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: