HsaINT1029218 @ hg38
Intron Retention
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33296028-33296464:-
Coord C1 exon
chr6:33296414-33296464
Coord A exon
chr6:33296326-33296413
Coord C2 exon
chr6:33296028-33296325
Length
88 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GGCTGATTCCCTTCTCCCAGGGT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GCTGGAAGCCCTTGAATCTCATCCTACCGACGAACTAGAGAGGACAACAGA
Seq A exon
GTGAGTGACCCCTGGTTCTTAATCTCACAGTCCCCTCTGCCCAGGCTGCAGCTTTACCTCTCACCCTTGGCTGATTCCCTTCTCCCAG
Seq C2 exon
GGTAGCCATCTCTGTACTGTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGCCAAGGGTCAGCTTGACCGGCTTGAGAGCTTCTTACTTCAGACAGGGTATGCAGCAGGGAAGGGTGTTGGGGGGGGCAGCGCTGACCTCATCCGCAATCTCCGGTCCCGGGTGGACCCCCAGGCCCCCGACCTTCCTAAGCCCCTGGCCCTCCCCGGCGATCCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441:ENST00000497454:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(17.3=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGCCCTTGAATCTCA
R:
AACACCCTTCCCTGCTGCATA
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains