MmuINT0134173 @ mm9
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34069266-34069696:+
Coord C1 exon
chr17:34069266-34069316
Coord A exon
chr17:34069317-34069398
Coord C2 exon
chr17:34069399-34069696
Length
82 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCTGATTCCCCTTCTCTCAGGGT
3' ss Score
7.86
Exon sequences
Seq C1 exon
GCTGGAAGCCCTTGAATCTCATCCTCCCGGTGAGCTAGAGAGGACCACAGG
Seq A exon
GTGAGTGGCCCTGTCTGAACCTCAGTCCCCTCAGGGTGCTGAGGCTAGACCTCTGACCCCTGGCTGATTCCCCTTCTCTCAG
Seq C2 exon
GGTAGCCATCTCTGTACTTTCAACTTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGGCGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-Rgl2:NM_009059:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(17.3=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTAGAGAGGACCACAGG
R:
GGTTTCGGATGAGGTCAGCAC
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: