RnoINT0126470 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5463482-5463914:-
Coord C1 exon
chr20:5463864-5463914
Coord A exon
chr20:5463780-5463863
Coord C2 exon
chr20:5463482-5463779
Length
84 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCTGGTTCCCCTTCTCTCAGGGT
3' ss Score
8.13
Exon sequences
Seq C1 exon
GCTGGAAGCCCTCGAATCGCATCCTCCGGGCGAGCTAGAGAGGACCACAGG
Seq A exon
GTGAGTGGCCCTGTCTGAACCGCAGTCTGCTCAGAGGGAGCTGAGGCTGGACCTCTGACCCCTGGCTGGTTCCCCTTCTCTCAG
Seq C2 exon
GGTAGCCATCTCTGTACTTTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGACGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTTGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(17.3=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTAGAGAGGACCACAGG
R:
GGTTTCGGATGAGGTCAGCAC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]