HsaINT1047708 @ hg38
Intron Retention
Gene
ENSG00000178917 | ZNF852
Description
zinc finger protein 852 [Source:HGNC Symbol;Acc:HGNC:27713]
Coordinates
chr3:44498970-44502668:-
Coord C1 exon
chr3:44502542-44502668
Coord A exon
chr3:44500635-44502541
Coord C2 exon
chr3:44498970-44500634
Length
1907 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
CTTATTTTTTTTGGCAGCAGGTA
3' ss Score
4.92
Exon sequences
Seq C1 exon
GATACTGTGGCGTATGAGGACCTGTCTGAGGACTATACTCAGAAGAAATGGAAAGGTCTCGCACTCAGTCAGAGAGCCCTGCACTGGAACATGATGCTGGAAAATGACCGTAGCATGGCTTCTTTGG
Seq A exon
GTAATGATTCTGTTTCCTAGTCACTTAGAGTCTGCATGCTGCCATTCTCTTTTTTATATTCCTTTTCTTTTTAAACTTTTTACTACGAAAATTTCCAAACGGAGATAAGCTAGAGTGAATAAGAGTCAGTGTGTATGGAGCTGCCTGGGTCCTCTTGAATAGGACCTTCTCTGCATTCAGCTTGAACAATGATCAGCATTCTCTTCACCTCATTATTGATTGACATAAGGTGGTTTAGGTAGAGTTTTTTTAGTTGTAAGGAATAGAGAGCCACTCAAGTTATTGTAAGTAAGGAGCTGTGAGTCATAGGCTTAAAGGAATGAGAACCCAGAAGAAACTGATCGCTAGACCAGACTGTGGGAAGTAGGGCCTTGACTCAGGGCAGCCTGGGAGCCTGAACAGCAAAAGCAAATGCATGTTGATGCCTGTGTTCTGGTGTGAATGTAATGCAGCTGCTCGCAGTGTATCTGTTTTCTCTCTGCTTGTACTCCTCCTGCTGCCCATTTTCTTCACTGTGAATCTTTTGTCCTTTTCGTAGCTCTTTCCTAATTGTACTTCCTGTTCCCTTATATTTGTTGCTTGCTGTGTCTCCTAATGGCTTGGCTTCTCTCCATGTATCACTTCAGATTCCATTACCACTCGTAATTTTGCCCTACTTCCAGTTCCGAATTTCCTTAGAGACAGATTCCCATTGCTATAGCCATTACTCATCATCTCGGTTGGGCAGAGCTTTGGCCCAGGCCATGGCAGAGGCTGAAGACTAACCTACAGATAAGCTGCCCTTGGGTCTGGTACCTGGTACTGGTCCAATCACTTGCAGTCCATCATGGGATGATGTTCAGGATCACTTGCCACAGAGCATGGTTGCCTAAGTGTTGCTCTCTGCAAAGACTGGGGCAGTGCAGTTTCCTGGAAGGGCTTCTTGGCAGTGCAGGTGCTATGATTGATGCATATAGGGCAGTAGCCAACTCTGGAAAGGGTGGGCTTAGGAATCTTTCACCCAGACATCTTAAACTTTCCATAGGCTAACTGACATGATGGCTGTAGCCCCAATTCAGATGTGATTGAAAGGAACCCACATTTTGGTGTTTTTCCATGGCCATGATTACTCTGCCTTCTCCCAGATTTTGTATTCAGAATTCCAAAAGGCAAATATTTACCTGATCATTTCCTTTATATTCTAGATAATCAAAGGCATTTTAATTTATATTTCAAATGATTGATGTCCCTGTTATCTTTTCTGGGAGTGCACAACTGGCTCCTACCGGGCCAGTGCTCTGAGGGCCAGTGGCATCCCCACTTTTAGAACTCTGCTGTCTCCTTCAATACTGCTGTCCAGCTTTTCTCAACTGATAGCTTCTCCAAATCTTGTTACTGTCCTGTCATACAACATCTCTCCTTTTTGTACGCTTTCCTAATCATACACTCATAGTAGAAATTTCTCAACTCATTCCCATCTTTTCCTTGTCTCTTTCTTATATTTGACTTGAGGTATTTGCCAGCCTTCCCTCTCCCAACATCTTTTCTGAGAACCATGGAACCATATAATGTCATGGTTGGAAGGGAACTCAAAGTTTACCATTTTGCTAAAGAGACATAGTGTGAGAGTGACTTATATAAGATCACAGCATGCTTTGCAATCCAGTCTCTTGCTTTCCAGTGACCCTTCTGACTTGGCTGTGCTGGCTCAATATCTTTTTTCCACCCTCCTCCACTGACCGTCTTCTTCTTCCTTGTTTTTCTATCCCTAAGATACAATTGAGCATTTTGCTCTTGTTCTCAATGTGTCATCTCATTTCTTAACCATAATGTGACTTTTTTTCAGGTACATTAGCTCTTTATGATTCTGTTTCTTCAACAGGAAAAGAAATGAGTAAAAGTTGTTGTCTTATTTTTTTTGGCAGCAG
Seq C2 exon
GTAGGAACATGATGGAGAGTTCAGAGCTGACTCCGAAGCAGGAAATTTTTAAAGGATCAGAGTCATCTAATAGCACATCAGGGGGACTCTTTGGGGTGGTTCCTGGGGGAACAGAGACTGGAGATGTTTGTGAAGATACCTTCAAAGAGTTAGAAGGACAACCCTCAAATGAAGAAGGGAGCAGACTAGAAAGTGATTTCTTGGAAATAATAGATGAGGATAAGAAAAAATCCACAAAAGACAGATATGAGGAATATAAGGAAGTTGAGGAACATCCACCTCTGTCTTCCAGTCCTGTTGAACATGAAGGAGTTTTAAAGGGACAGAAATCCTATCGATGTGATGAATGTGGCAAAGCTTTTTATTGGAGTTCGCACCTCATTGGTCATCGGAGAATCCACACTGGAGAGAAACCCTATGAGTGTAATGAGTGTGGGAAGACCTTCAGGCAAACCTCCCAGCTCATTGTTCATCTCAGAACCCACACAGGGGAAAAGCCCTATGAATGCAGTGAGTGTGGAAAGGCCTATAGGCACAGCTCCCATCTCATTCAACACCAGAGACTCCATAATGGGGAGAAACCCTATAAATGTAATGAATGTGCAAAAGCTTTTAATCAGAGCTCCAAACTCTTCGACCACCAGAGAACCCATACTGGGGAGAAACCTTATGAATGTAAGGAGTGTGGGGCGGCCTTTAGTCGGAGTAAAAATCTTGTTCGACATCAGTTTCTGCACACTGGTAAGAAACCTTATAAGTGTAATGAATGTGGGAGAGCATTCTGTTCCAATAGAAATCTCATTGACCATCAGAGAACCCACACTGGGGAGAAGCCTTATAAATGTAATGAATGTGGCAAAGCCTTCAGTCGGAGTAAATGTCTTATTCGACATCAGAGCCTCCACACTGGGGAAAAGCCATACAAATGTAGTGAATGTGGGAAAGCCTTCAATCAGATCTCTCAACTTGTTGAACATGAGCGAATTCATACTGGAGAAAAACCATTTAAGTGTAGTGAGTGTGGTAAGGCATTCGGTCTGAGTAAATGTCTTATTCGGCACCAGAGGCTTCACACAAGTGAAAAGCCCTATAAATGCAATGAGTGTGGAAAATCCTTCAATCAAAACTCATACCTCATTATACACCAGAGAATTCACACTGGTGAGAAACCCTATGAATGTAATGAGTGTGGGAAGGTCTTCAGTTATAATTCTAGTCTTATGGTACATCAGAGAACCCATACTGGGGAAAAACCCTATAAATGCAATAGTTGTGGGAAAGCCTTTAGTGACAGCTCACAGCTTACTGTGCACCAGAGAGTCCACACTGGAGAGAAAAACCTTATGAATGTATTGAGTGTGGGAAAGCCTTTAGTCAGCGTTCCACTTTTAATCACCACCAGCGAACTCATGCTGGAGAGAAGCCCTCAGGTCTGGCTCGGTCATCTTCTTAAGGCATGGTTTTCTGAGACAGACAGCAAAGACCTTTGAGTTAAGCTGTCTTTATAAGAAGGATGTTCATCATGGTCTCCTTGGAGACCACTAATCACAGTGGAGACCATACCTACTTGCTTTTCCTTGGGTCACTAAGGTGGGAGAGTAGGTGCAACTTAGTCTGATCCTTACTTAGTAGGAAATTGGGGATTACATCTGTCATTAACTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178917:ENST00000436261:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCACTGGAACATGATG
R:
GGAAGACAGAGGTGGATGTTCC
Band lengths:
342-2249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains