MmuEX0002985 @ mm10
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24408537-24410201:+
Coord C1 exon
chr17:24408537-24408727
Coord A exon
chr17:24408825-24408898
Coord C2 exon
chr17:24409269-24410201
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACCTGCTCTCTTCTCTGCAGGCA
3' ss Score
12
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TATGGAGGAGTGTGAAGCCTTATGTACCAGGCTGGCCATCATGGTACAGGGCCAGTTCAAGTGCCTGGGCAGCCCACAGCACCTCAAGAGCAAGTTTGGCAGCGGCTACTCCCTGCAGGCCAAGGTCCGGAGCGAGGGGAAGCAAGACGCGCTAGAGGAGTTCAAGGCCTTTGTGGACCTGACCTTCCCAG
Seq A exon
GCAGCATCCTAGAAGATGAGCACCAAGACATGGTCCATTATCATCTGCCTGGCTGTGACCTCAGCTGGGCCAAG
Seq C2 exon
GTATTTGGTATCCTGGAGAAAGCCAAGGAGAAGTATGGAGTGGATGATTACTCTGTGAGCCAGATCTCCCTGGAGCAGGTCTTTCTGAGCTTTGCCCACCTACAACCCCCCACCACTGAGGATGGCCGGTGAGGAGCTCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGGGCAAATCGTGCTTAGCCGTGCGTCCTCTCCCTCCCAGTTTCTCCTTTCTTTCATTTTTAATCACTCTTTTCTATGATGGACATGAAAAACAATCAAGGTGATATGCACAAAGTGGACCATGTGTGTCTGTCAGTGCCTGCAGGCAGGAGTCAGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-'57-87,'57-83,58-87
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGGGCCAGTTCAAGTG
R:
TCTCCTTGGCTTTCTCCAGGA
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types