RnoEX6046385 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13778792-13779963:+
Coord C1 exon
chr10:13778792-13778982
Coord A exon
chr10:13779120-13779193
Coord C2 exon
chr10:13779634-13779963
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCCTGGTCTCCTCTATGCAGGCA
3' ss Score
9
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TATGGAGGAGTGTGAAGCCTTATGTACCCGGCTGGCCATCATGGTACAGGGCCAGTTCAAGTGCCTGGGCAGCCCACAGCACCTCAAGAGCAAGTTTGGCAGCGGCTACTCCCTGCAGGCCAAGGTCCGGAGTGAGGGGAAGCAAGAAGTACTAGAGGAGTTCAAGGCATTTGTGGACCTGACCTTCCCAG
Seq A exon
GCAGCGTCCTAGAAGATGAGCACCAAGACATGGTCCACTACCATCTGCCTGGCTGTGACCTCAGCTGGGCCAAG
Seq C2 exon
GTATTTGGTATCCTGGAGAAGGCCAAGGAGAAGTATGGAGTGGACGATTACTCTGTGAGTCAGATCTCGCTGGAGCAGGTCTTTCTGAGCTTTGCCCACCTGCAGCCCCCCACCACTGAGGATGGACGATGAGGAGCTCTTCCGCCTCCAGAGCACCAGGCGTGGAAGGGGAGCCAGTGCTTAGCCTCGCATCCTCCCCTCCCAGTCTCTGTTCTTTCATTTTTAATCACTCTTTTCTATGATGGACATGACAAGAATCAAGGTGATATGCACAAAGTGGACCATGTGTGTCTGTCAGTGCCTGCAGGCAGGAGTCAGCATGCAGGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'43-58,'43-54,44-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCATTTGTGGACCTGACC
R:
GAGCTCCTCATCGTCCATCCT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]