GgaEX6013161 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13567403-13570164:-
Coord C1 exon
chr14:13569977-13570164
Coord A exon
chr14:13569818-13569891
Coord C2 exon
chr14:13567403-13569446
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTGGTCTCTCGCAGGCA
3' ss Score
10.06
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CATGGAGGAGTGCGAGGCGCTGTGCACGCGGCTGGCCATCATGGTGAACGGGCAGTTCAAGTGCCTGGGCAGCCCCCAGCACCTGAAGAGCAAGTTTGGCAGTGGCTACACCTTGCTGGCCAAAACGCGGACTGATGAGGAGGGCGAGCTGCAGGCCTTCAAGGCCTTTGTGGAGAAGACTTTCCCAG
Seq A exon
GCAGTGTCCTGAAGCACGAGCACCAGGGCATGGTGCACTACCACTTGACCAACAAGAACCTCAGCTGGGCGCAG
Seq C2 exon
GTCTTTGGGGCCTTGGAGAAAGCCAAAGAGAAGTATCGCTTAGAAGACTATTCGGTTAGCCAGATATCCCTGGAGCAAGTCTTCATGAGCTTCACTCGCTTCCAACACTACACAGAGGACAGAGGGAAATGAGCAAAAGCCCTTCACGTCCTCCTTCACGGACTGGCCCCGCCGCCTATACATAGTATATATAGAGACAGTAATTTATATATCAGCGTGTGTCTTAAATAATGTATAAATGTAAGAAAATTTTCACTGGGGAGGGGGGAGAGGATGGAGTCGTACCTCCTGCTGTTGGGAACACAGGGCTGCGTGTGCATCGTCTGCCAGCGCCGTGCACACACATGTGTAACTGAGTGTGTGTCTGACACTTCCACCCGCGTCTGTCCCCATCCGTGGCAAAAAGAAAAGCCCTCAAAGCAGGGGAGGGGGCGGCCGGGTGCTGGTGGGCGCTGCAGGCTGTGCCGGAGCCTCGGGTCCCCATGGCCCCCCTCCCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'34-47,'34-45,35-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACGCGGACTGATGAGGA
R:
GTTGGAAGCGAGTGAAGCTCA
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]