MmuEX0006432 @ mm10
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130018833-130024096:-
Coord C1 exon
chr5:130024042-130024096
Coord A exon
chr5:130019662-130019856
Coord C2 exon
chr5:130018833-130018916
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTCCTCTTGGCCAGAGC
3' ss Score
7.31
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
ATTCGTAAGACAGAAGCTCCAGGAGGAGGAGGAACCGCCCAACATGGCATCAGAG
Seq A exon
AGCGGGAAGCTATGGGGTGGCCGGTTTGTGGGTGCTGTCGACCCCATCATGGAGAAGTTCAACTCATCTATCTCCTATGACCGGCATCTGTGGAATGTGGATGTGCAGGGGAGCAAGGCCTACAGCAGGGGCCTGGAGAAGGCGGGGCTTCTCACCAAAGCCGAGATGCAGCAGATACTGCAAGGGTTGGACAAG
Seq C2 exon
GTTGCTGAAGAGTGGGCCCAAGGCACCTTCAAATTACATCCTAATGATGAAGACATCCACACAGCCAACGAGCGGCGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
PF0020615=Lyase_1=PU(19.7=89.2)
C2:
PF0020615=Lyase_1=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAGACAGAAGCTCCAGGA
R:
CGTTGGCTGTGTGGATGTCTT
Band lengths:
123-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types