MmuEX0006432 @ mm9
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130494703-130499966:-
Coord C1 exon
chr5:130499912-130499966
Coord A exon
chr5:130495532-130495726
Coord C2 exon
chr5:130494703-130494786
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTCCTCTTGGCCAGAGC
3' ss Score
7.31
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
ATTCGTAAGACAGAAGCTCCAGGAGGAGGAGGAACCGCCCAACATGGCATCAGAG
Seq A exon
AGCGGGAAGCTATGGGGTGGCCGGTTTGTGGGTGCTGTCGACCCCATCATGGAGAAGTTCAACTCATCTATCTCCTATGACCGGCATCTGTGGAATGTGGATGTGCAGGGGAGCAAGGCCTACAGCAGGGGCCTGGAGAAGGCGGGGCTTCTCACCAAAGCCGAGATGCAGCAGATACTGCAAGGGTTGGACAAG
Seq C2 exon
GTTGCTGAAGAGTGGGCCCAAGGCACCTTCAAATTACATCCTAATGATGAAGACATCCACACAGCCAACGAGCGGCGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-'3-14,'3-12,7-14
Average complexity
S
Mappability confidence:
91%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
PF0020615=Lyase_1=PU(35.2=89.2)
C2:
PF0020615=Lyase_1=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAGACAGAAGCTCCAGGA
R:
CGTTGGCTGTGTGGATGTCTT
Band lengths:
123-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: