BtaEX6110037 @ bosTau6
Exon Skipping
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28253412-28256495:-
Coord C1 exon
chr25:28256441-28256495
Coord A exon
chr25:28253827-28254021
Coord C2 exon
chr25:28253412-28253495
Length
195 bp
Sequences
Splice sites
3' ss Seq
GCTTCTGCCCTTCTGGCCAGAGC
3' ss Score
6.35
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
ACCCGGAGGACCTAGGCTCCCGGAGGACAAGGAACCGCCCAACATGGCATCGGAG
Seq A exon
AGCGGGAAGCTATGGGGTGGCCGGTTTGTGGGCACAGTGGACCCCATCATGGAAAAGTTCAACTCGTCCATCACGTACGACCGGCACCTCTGGGAGGCGGACGTGCAGGGCAGCAAAGCCTACAGCCGGGGCCTGGAGAAGGCGGGGCTCCTCACCAAAGCCGAGATGGACCAGATACTCCATGGCCTGGACAAG
Seq C2 exon
GTAGCTGAGGAGTGGGCTCAGGGCACCTTCAAACTAAACCCCAATGATGAGGACATCCATACGGCCAATGAGCGGCGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314-'1-8,'1-4,6-8=AN
Average complexity
A_S
Mappability confidence:
92%=100=86%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
PF0020615=Lyase_1=PU(19.7=89.2)
C2:
PF0020615=Lyase_1=FE(9.2=100)
Main Skipping Isoform:
ENSBTAT00000020365fB101
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCTAGGCTCCCGGAG
R:
CTTCAGACGCCGCTCATTGG
Band lengths:
134-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]