RnoEX0012258 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30165694-30170933:+
Coord C1 exon
chr12:30165694-30166043
Coord A exon
chr12:30169922-30170116
Coord C2 exon
chr12:30170850-30170933
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTCCTCTTGGCCAGAGC
3' ss Score
7.31
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
GTCACACCCACCTCTCCCAATTGGTTCTACTCTTCCAGGAGGCGGGGACAAGGCAGGGGCAGCAGACGCCATCCGGACCAGAAAAAGCCAGGAGAGACCAGAAGGTGCCTGGTCCCTGAGAGTCTGGTCCACTAACTCCAGGGACTGTGGGACAGAGGAACAAACAAGAAAGAACTCGAGGCCTCGCTGAGTGGCGCGCTTGCTGAGTGCTGCCACATCCCGCAAGCTGAGCAGGTATCCCAACTCTGTTCCTGCCCGGTAGACCACCCGAGGTGGTGAGTGTGGTCTTGTCTTCCAGATTCGTAGGACAGAAGCTCCAGGAGGAGGACCCGCCCAACATGGCATCGGAG
Seq A exon
AGCGGGAAGCTATGGGGTGGCCGATTTGCAGGCTCGGTCGACCCCACCATGGACAAGTTCAACTCATCTATCGCCTATGACCGGCATCTGTGGAATGTGGACCTGCAGGGAAGCAAGGCCTACAGCAGGGGCCTGGAGAAGGCAGGGCTTCTCACCAAAGCTGAGATGCAGCAGATACTGCAAGGCCTGGACAAG
Seq C2 exon
GTGGCTGAAGAGTGGGCCCAAGGCATCTTCAAATTGTACCCTAATGATGAAGACATCCACACGGCCAACGAGCGGCGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020615=Lyase_1=PU(19.7=89.2)
C2:
PF0020615=Lyase_1=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAAGAACTCGAGGCCT
R:
GGCCGTGTGGATGTCTTCATC
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]