DreEX0015261 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31216467-31219698:+
Coord C1 exon
chr21:31216467-31216671
Coord A exon
chr21:31216760-31216954
Coord C2 exon
chr21:31219615-31219698
Length
195 bp
Sequences
Splice sites
3' ss Seq
TAATGTCTATTTTATGACAGGGA
3' ss Score
5.11
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
ATAAACGAGGAGGAAATGCAGTCCGGTCGCTGTTGGATGTTCAGGCTCTTACTGTAATTTATCTCACGAATACTTAAAAGCACTGATTTGTTCCTTTAATTATTTGACATTTCCTCATTCTGTTTGAATCATACGCTTTAGTTTTCCGCTTGCTCATCGCACGTAGGTCGCTACTCTAGAGACTGTTACAATGGCAAGTTCAGAG
Seq A exon
GGAAATAAACTATGGGGTGGTCGCTTTGTGGGAAACACCGACCCTATAATGGAAAAGTTCAACGCGTCAATCTCGTACGACCAGCGAATGTGGAAAGCTGATATTAAAGGGAGTAAAGCTTATGTAAAAGCTTTACAGAAAGCAAGCCTTGTAACCCAAAACGAGATGGAACAGATTCTTACAGGCCTTGACAAG
Seq C2 exon
GTTTTGGATGAGTGGTCTAAAGGCGAGTTCGAGATCAAACCAGGTGACGAGGACATTCACACAGCCAATGAACGCAGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
PF0020615=Lyase_1=PU(19.7=89.2)
C2:
PF0020615=Lyase_1=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGGATGTTCAGGCTCT
R:
TTGGCTGTGTGAATGTCCTCG
Band lengths:
245-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]