GgaEX1009420 @ galGal4
Exon Skipping
Gene
ENSGALG00000002558 | ASL1
Description
Delta-1 crystallin [Source:UniProtKB/Swiss-Prot;Acc:P02521]
Coordinates
chr19:4950446-4952842:-
Coord C1 exon
chr19:4952780-4952842
Coord A exon
chr19:4951446-4951640
Coord C2 exon
chr19:4950446-4950529
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTAATTACTCTCAGGGG
3' ss Score
6.79
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTTGCACCAGGTGCCAGGATTGCTGCAAACACGAGCAAAACGTCGTCCGAAATGGCAACCGAG
Seq A exon
GGGGATAAACTTTTGGGAGGAAGATTTGTTGGAAGCACAGATCCCATCATGGAGATTCTCAGCTCTTCTATATCCACTGAGCAGAGACTGACTGAAGTTGATATCCAGGCAAGCATGGCTTATGCCAAAGCCTTGGAGAAGGCTAGCATCCTGACTAAAACTGAGCTGGAGAAGATCCTGAGTGGCCTGGAAAAG
Seq C2 exon
ATCTCTGAGGAATCATCTAAGGGAGTCCTTGTAATGACCCAAAGTGATGAAGATATCCAGACTGCCATTGAACGCAGACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558-'3-3,'3-1,4-3
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020615=Lyase_1=PU(19.7=89.2)
C2:
PF0020615=Lyase_1=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGCCAGGATTGCTG
R:
TTCAGTCTGCGTTCAATGGCA
Band lengths:
140-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]