MmuEX0009068 @ mm9
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120321601-120327060:+
Coord C1 exon
chr2:120321601-120321809
Coord A exon
chr2:120322714-120322762
Coord C2 exon
chr2:120326947-120327060
Length
49 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTGTGTTTTTCGCAGGGA
3' ss Score
11.01
5' ss Seq
TAGGCTCTT
5' ss Score
-8.39
Exon sequences
Seq C1 exon
ATGCACGGGAATAAGCAACACCTGCAGAAGGACTTCTTCTTGTACAACGCCTCCAAGGCCAGAAGCAAAACCTACATCAACATGCGGGAGGTGTCCCAGCGCTTCCGCCTGCCACCCAGCGAGTATGTCATCGTACCCTCCACCTACGAGCCCCACCAGGAGGGGGAATTCATCCTCCGAGTCTTCTCCGAAAAGAGGAATCTCTCTGA
Seq A exon
GGAAGCTGAAAATACAATCTCTGTGGATCGGCCAGTGGTAAGTGGTTAG
Seq C2 exon
CCCATCATCTTCGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGGCAGAGGAGGGCAAAGACAAAGCAGGGCCCGAGAAACGAGGGGAAACCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'24-32,'24-26,26-32
Average complexity
ME(29_29-26_26[100=88])
Mappability confidence:
100%=80=89%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.833 C2=0.763
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.5=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAGCGAGTATGTCATCG
R:
AGCTCCTTGTTGCTGTTTGCT
Band lengths:
141-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: