GgaEX6030250 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39832195-39834793:+
Coord C1 exon
chr3:39832195-39832403
Coord A exon
chr3:39833175-39833211
Coord C2 exon
chr3:39834713-39834793
Length
37 bp
Sequences
Splice sites
3' ss Seq
TAAGGTTTTGTTTTCCCCAGGGA
3' ss Score
8.7
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCCCTGGTGGAGATGAACACTTGAGCAAAGACTTCTTCAGGTACCACGCCTCCAAGGCCAGGAGCAAAACCTACATCAATTTAAGGGAAGTGTCTGACAGATTCAAGCTGCCACCAGGTGACTACATCCTCATTCCAACCACATTTGAGCCACATCAGGAGGCAGATTTCTGCCTGAGAATCTTTTCAGAGAAGAAGGCCATCACTGA
Seq A exon
GGATCTGGATGAAAATGTTGCCATTGATCTCCCCGAG
Seq C2 exon
CCTCCAAACCCAACCCCAAGTCCACAAGAATCTGAGGAAGAAAAGCAGTTCCGGGCACTGTTTGAGCAGATCTCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.538 C2=0.519
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(46.9=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCAGGTGACTACATCCT
R:
GACTTGGGGTTGGGTTTGGAG
Band lengths:
121-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]