MmuEX6039316 @ mm9
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:127129596-127133073:+
Coord C1 exon
chr8:127129596-127129804
Coord A exon
chr8:127131855-127131891
Coord C2 exon
chr8:127132993-127133073
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTCTGCCACTGCAGGGA
3' ss Score
8.59
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGCCCAGACAAGGACGGACACCTGAGTAGGGACTTTTTCAGGTACCATGCCTCCCTGGCCCGAAGCAAGACGTTCATCAACTTGAGAGAAGTCTCAGAGCGATTCCAGCTGCCCCCGGGAGACTATATCCTCATCCCCAGCACCTTTGAGCCGCATCAGGAGGCCGACTTCTGCCTGAGAATCTTCTCTGAGAAGAGAGCTGTGACTCG
Seq A exon
GGACCTGGACGAGAACATAGACATTGACCTTCCTGAG
Seq C2 exon
CTTCCAAAGCCGACTCCACAGGAGGAGGAAACAGAAGAGGAACAGCAGTTCCGGGCCCTGTTCCAGCGAGTTGCTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.519
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(46.9=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCCGGGAGACTATATC
R:
CTGTGGAGTCGGCTTTGGAAG
Band lengths:
122-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: