HsaEX6037291 @ hg19
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:1486]
Coordinates
chr1:230916246-230923348:+
Coord C1 exon
chr1:230916246-230916454
Coord A exon
chr1:230921727-230921763
Coord C2 exon
chr1:230923268-230923348
Length
37 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCTGCCCCTACAGGGA
3' ss Score
11.08
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGCCCTGACAAAGACGAACACCTGAACAAAGACTTCTTCAGATACCACGCTTCTCGGGCCAGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCGGTTCAAGCTGCCCCCTGGGGAGTACATCCTGATTCCCAGCACTTTTGAGCCCCACCAGGAAGCTGATTTCTGTCTGAGAATCTTTTCAGAGAAAAAAGCCATTACCCG
Seq A exon
GGATATGGATGGAAATGTAGACATTGACCTTCCTGAG
Seq C2 exon
CCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAGCAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.769 C2=0.630
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(46.9=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCAGCACTTTTGAGCCC
R:
CCTCCTCTGTCTCCTGGTCAG
Band lengths:
117-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)