DreEX6033728 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53231210-53232521:-
Coord C1 exon
chr1:53232313-53232521
Coord A exon
chr1:53231428-53231464
Coord C2 exon
chr1:53231210-53231290
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTCATTGCTATGTTTTTCAGTGA
3' ss Score
7.35
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTCCCGATGATCAAGACCACCAGGGCAAAGATTTTTTCCGCTATAATCCCTCTAAAGCACGGAGCCGTACTTATATCAACGTGAGGGAGGTTTCCGAGCGCTTCAGACTGCCGCCTGGAAACTACCTGCTGGTGCCCACCACCTTTCAGCCGCACAAAGAGGCTGATTTCCTCATCCGCCTCTTCTCTGAGAAGAAAGCTGGAGCCAT
Seq A exon
TGAGGTGGGAAACAAAATTGAAGCTGATCTGCCAGAG
Seq C2 exon
CCACCGAAACCAAACCCACCTGAAGAGGAGACTGATGAGGAGAAAGGCCTGAGGAAACTCTTTGAACAGGTCGCTGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.769 C2=0.704
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(46.6=97.1)
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATCCGCCTCTTCTCTGA
R:
CCAGCGACCTGTTCAAAGAGT
Band lengths:
116-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]