RnoEX6061181 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57364257-57368944:+
Coord C1 exon
chr19:57364257-57364465
Coord A exon
chr19:57367001-57367037
Coord C2 exon
chr19:57368864-57368944
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCTGCCACTGCAGGGA
3' ss Score
8.18
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGCCCAGACAAGGACGGACACCTGAATAGGGACTTTTTCAGGTACCATGCCTCTCTGGCCCGAAGTAAGACATTCATCAACTTGAGAGAAGTCTCAGGCCGCTTCCAGCTGCCCCCGGGAGACTATATCCTCATCCCCAGCACCTTTGAGCCACACCAGGAGGCTGACTTCTGCCTGAGAATCTTCTCTGAGAAGAAAGCTGTTACTCA
Seq A exon
GGACCTGGATGAGAACATAGACATTGACCTTCCTGAG
Seq C2 exon
CTTCCAAAGCCGACACCACAGGAGGAGGAAACCGAAGAGGAGCGGCAGTTCCGGGCCCTGTTCCGTCGAATTGCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.481
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(46.9=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCATCCCCAGCACCTTT
R:
CCTCTTCGGTTTCCTCCTCCT
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]