BtaEX6052763 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37875470-37878442:+
Coord C1 exon
chr10:37875470-37875678
Coord A exon
chr10:37876436-37876472
Coord C2 exon
chr10:37878425-37878442
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGTGTTCCTCACAGGGA
3' ss Score
10.1
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGCACGGCAACAAGCAGCACCTGCAGAAGGACTTCTTCCTGTACAATGCCTCCAAGGCTAGGAGCAGAACCTACATCAACATGCGGGAGGTGTCTGAGCGCTTCCGCCTGCCTCCCAGCGAGTACGTCATTGTGCCCTCCACTTACGAGCCCCACCAGGAGGGCGAGTTCATCCTCCGGGTCTTCTCGGAAAAGAGGAACCTCTCTGA
Seq A exon
GGAAGTTGAGAATACAATCTCTGTGGATCGGCCAGTG
Seq C2 exon
AAAAAGAAAAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.462 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.5=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]