RnoEX6018557 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112268492-112275147:+
Coord C1 exon
chr3:112268492-112268700
Coord A exon
chr3:112269544-112269580
Coord C2 exon
chr3:112275070-112275147
Length
37 bp
Sequences
Splice sites
3' ss Seq
TACGCTTGTGTTTTTCACAGGGA
3' ss Score
9.67
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGCACGGGAATAAGCAACACCTGCAGAAGGACTTCTTCTTGTACAATGCCTCCAAGGCCAGGAGCAAAACCTACATCAACATGCGGGAGGTGTCCCAGCGCTTCCGCCTGCCGCCCAGCGAGTATGTCATTGTCCCCTCCACTTACGAGCCCCATCAGGAGGGGGAATTCATCCTCCGGGTCTTCTCTGAAAAGAGGAATCTCTCTGA
Seq A exon
GGAAGCTGAGAATACAATCTCTGTGGACCGGCCAGTG
Seq C2 exon
CCACGGCCTGGCCACACAGACCAGGAGAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATTGCAGGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'17-22,'17-18,19-22=AN
Average complexity
A_C3
Mappability confidence:
100%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.846 C2=0.731
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.5=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCCGGGTCTTCTCTGA
R:
GCCTGCAATCTGCCTGAAGAT
Band lengths:
114-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]