MmuEX0011704 @ mm10
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134517907-134535237:-
Coord C1 exon
chr5:134535047-134535237
Coord A exon
chr5:134522586-134523142
Coord C2 exon
chr5:134517907-134518031
Length
557 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTAACTTATCCACAGGGT
3' ss Score
8.9
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGACCGAGGATGGCAGAGAGGATGTGACCATTGTCTGCCTTGGTCTGCCCTTCTAGTGGCACCGCCATGCAGAAGCCCAGTGGCCTGAAGCCCCCTGGCCGAGGGGGGAAGCACTCCAGCCCCGTGGGCAGGCCGTCCGTTGGGTCTGCTTCATCTTCCGTGGTGGCCTCGACCAGTGGCTCCAAAGAAG
Seq A exon
GGTCTCCCCTGCACAAACAGGCATCGGGCCCCTCCTCGTCTGGAGCCGCCACCACCGTCTCTGAGAAGCCAGGTCCAAAGGCGGCTGAAGTGGGTGATGACTTCCTGGGAGACTTTGTGGTGGGCGAGAGGGTGTGGGTGAATGGCGTGAAGCCAGGCGTGGTGCAGTACCTGGGTGAGACACAGTTTGCGCCAGGCCAGTGGGCCGGCGTGGTCTTGGACGACCCGGTGGGCAAGAACGATGGAGCTGTGGGTGGCGTGCGCTACTTCGAGTGCCCGGCTCTACAGGGCATCTTCACGCGGCCCTCCAAGCTGACCCGCCAGCCCACCGCTGAGGGCTCGGGCAGTGATACGCACTCGGTGGAATCCCTCACGGCCCAGAACCTGTCCCTGCATTCTGGCACGGCCACGCCCCCACTCACAGGCCGAGTCATCCCCCTGCGGGAGAGTGTTCTTAACAGCTCAGTGAAGACGGGCAATGAGTCTGGTTCCAACCTCTCCGACAGTGGTTCTGTGAAGCGCGGTGACAAGGACCTCCACCTGGGAGACCGTGTGCTG
Seq C2 exon
GTTGGTGGGACGAAGACCGGTGTGGTGCGATATGTTGGGGAGACGGACTTTGCCAAAGGCGAGTGGTGTGGTGTGGAGCTGGATGAGCCCCTCGGGAAGAACGACGGGGCGGTGGCAGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146-'6-5,'6-3,13-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.559 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGAGGATGGCAGAGAG
R:
ACCGCCCCGTCGTTCTTC
Band lengths:
303-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types