RnoEX0021806 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25191016-25207407:+
Coord C1 exon
chr12:25191016-25191206
Coord A exon
chr12:25202371-25202927
Coord C2 exon
chr12:25207283-25207407
Length
557 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTAACTTATCCACAGGGT
3' ss Score
8.9
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGACCAAGGATGGCAGAGAGGATATGACCGGCGGCTGCCGTCGTCTGCCCTCCTAGTGGCATCACCATGCAGAAGCCCAGTGGCCTGAAGCCCCCTGGCCGAGGGGGGAAGCACTCCAGTCCCGTGGGTAGGCCCTCCATCGGGTCTGCCTCATCTTCTGTGGTGGCATCGGCGAGCGGCTCCAAAGAAG
Seq A exon
GGTCTCCCCTGCACAAGCAGGCGTCGGGCCCCTCCTCGGCTGGAGCCACCACTACTGTCTCCGAGAAGCCAGGTCCAAAGGCAGCCGAAGTGGGTGATGACTTCTTGGGAGACTTCGTGGTGGGCGAGAGGGTGTGGGTGAATGGCGTGAAGCCCGGCGTGGTGCAGTACCTGGGTGAGACACAGTTTGCGCCAGGCCAGTGGGCCGGCGTGGTCTTGGATGATCCTGTGGGCAAGAACGATGGAGCTGTGGGTGGCGTGCGCTACTTCGAGTGCCCAGCTCTACAGGGCATCTTCACACGGCCCTCCAAGCTGACCCGCCAGCCCGCAGCTGAGGGCTCCGGCAGTGACGCCCACTCAGTGGAATCCCTCACCGCCCAGAACCTGTCCCTGCATTCTGGCACGGCCACGCCCCCACTCACCGGCCGAGTCATCCCCCTGCGGGAGAGTGTTCTCAACAGCTCCGTGAAGACGGGCAATGAGTCTGGCTCCAACCTCTCGGACAGTGGTTCTGTGAAGCGTGGTGACAAGGACCTCCACCTGGGAGACCGTGTGCTG
Seq C2 exon
GTTGGTGGGACGAAGACCGGTGTGGTACGATATGTTGGGGAGACGGACTTTGCCAAAGGCGAGTGGTGTGGTGTGGAGCTGGACGAGCCCCTTGGGAAGAACGATGGGGCAGTGGCAGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611-'5-5,'5-3,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.532 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGATGGCAGAGAGGATA
R:
CCACTGCCCCATCGTTCTTC
Band lengths:
302-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]