HsaEX0015678 @ hg19
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]
Coordinates
chr7:73731810-73768334:+
Coord C1 exon
chr7:73731810-73731997
Coord A exon
chr7:73752778-73753334
Coord C2 exon
chr7:73768210-73768334
Length
557 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTCCTTCTCTGCAGGCT
3' ss Score
12.48
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGAGTGAAGATGGCAGAGAGGACGTGACCAGCACTCACCCTTGTCCACCTGCCCAGTGGCACCGCCATGCAGAAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTCCAGCCCCATGGGCCGGACATCTACTGGGTCAGCTTCATCCTCGGCGGCGGTGGCCGCTAGCTCCAAGGAAG
Seq A exon
GCTCCCCACTGCACAAACAGTCATCTGGACCCTCCTCCTCCCCGGCCGCAGCTGCTGCCCCCGAGAAGCCGGGCCCCAAGGCGGCGGAAGTGGGGGATGACTTCCTGGGGGACTTTGTGGTGGGCGAGCGGGTGTGGGTGAACGGCGTGAAGCCAGGCGTGGTGCAGTATCTGGGAGAGACGCAGTTCGCACCGGGCCAGTGGGCTGGCGTGGTGCTGGACGACCCGGTGGGCAAGAATGATGGCGCGGTGGGCGGCGTGCGCTACTTCGAGTGCCCGGCCCTCCAGGGTATCTTCACGCGGCCCTCCAAGCTGACCCGGCAGCCCACGGCCGAGGGCTCGGGGAGTGATGCCCACTCCGTGGAGTCGCTGACTGCCCAGAACCTGTCATTGCATTCGGGCACGGCCACGCCCCCGCTGACCAGCCGCGTCATCCCCCTGCGGGAGAGCGTCCTCAACAGCTCCGTGAAGACTGGCAACGAGTCGGGATCCAACCTCTCAGACAGCGGCTCTGTGAAGCGGGGCGAAAAGGACCTGCGCCTGGGGGACCGCGTGCTG
Seq C2 exon
GTTGGCGGGACGAAGACTGGCGTGGTGCGGTACGTGGGGGAGACAGACTTTGCCAAGGGCGAGTGGTGTGGCGTGGAGCTGGACGAGCCCCTTGGGAAGAATGATGGGGCGGTGGCGGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.548 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGAAGATGGCAGAGAGGA
R:
CCACCGCCCCATCATTCTTC
Band lengths:
302-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)