GgaEX6016943 @ galGal3
Exon Skipping
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2761920-2782587:-
Coord C1 exon
chr19:2782476-2782587
Coord A exon
chr19:2769274-2769812
Coord C2 exon
chr19:2761920-2762044
Length
539 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCCTTGGTTTGCAGGCT
3' ss Score
9.63
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGCTGAAGCCAAGTGGACTTAAAATCCCTGGCAGGGCAGGGAAGCACTCCAGCCCAGTGGGACGGGCATCAGGGACGGCAGCAGCGACCGTCACCACTGGTACAAAGGAAG
Seq A exon
GCTCGCCTCTTCACAAGCAAAGTGCCACCTCCACCTCCAGCGCCGACAAGTCGGGATCGAAGGCCGCCGAGGTGGGCGATGACTTCCTGGGAGACTTTGTGGTGGGCGAACGCGTCTGGGTGAACGGAGTGAAGCCGGGAGTGATCCAATACCTTGGGGAGACACAATTTGCTCCGGGCCAGTGGGCGGGGGTCGTGCTGGATGACCCCGTGGGTAAGAACGATGGCTCCGTCGGAGGCGTGCGCTACTTCGAGTGCCAACCGCTGCAGGGCATTTTCACGCGGCCGTCCAAGCTGACGCGGCAGCCCGTGGCTGAGGGCTCTGGGAGCGACGTCCCCTCCGTGGATTCGCTTACAGCTCAGAACTTGTCCCTGCACTCGGGGACGGCCACGCCGCCGCTCTCCACTCGCGTCATCCCCCTGCGGGAGAGCGTCCTCAACAGCGCCATGAAGACGGGCAACGAGTCGGGATCCAACCTGTCGGACAGCGGGTCTGTGAAGAAAGGGGAGAAGGACCTGCGGCTCGGAGACCGCGTGCTG
Seq C2 exon
GTCGGTGGGACGAAGACGGGAGTTGTGCGCTACGTGGGAGAGACAGACTTTGCCAAAGGAGAGTGGTGTGGCGTGGAGCTGGATGAGCCCCTGGGGAAGAACGATGGGGCTGTGGCTGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.472 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=36.7),PF0130220=CAP_GLY=PU(7.6=2.8)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAAGCCAAGTGGACTT
R:
CTTGTTCCAGCCACAGCCC
Band lengths:
237-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]