MmuEX0011704 @ mm9
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134993777-135011107:-
Coord C1 exon
chr5:135010917-135011107
Coord A exon
chr5:134998456-134999012
Coord C2 exon
chr5:134993777-134993901
Length
557 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTAACTTATCCACAGGGT
3' ss Score
8.9
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGACCGAGGATGGCAGAGAGGATGTGACCATTGTCTGCCTTGGTCTGCCCTTCTAGTGGCACCGCCATGCAGAAGCCCAGTGGCCTGAAGCCCCCTGGCCGAGGGGGGAAGCACTCCAGCCCCGTGGGCAGGCCGTCCGTTGGGTCTGCTTCATCTTCCGTGGTGGCCTCGACCAGTGGCTCCAAAGAAG
Seq A exon
GGTCTCCCCTGCACAAACAGGCATCGGGCCCCTCCTCGTCTGGAGCCGCCACCACCGTCTCTGAGAAGCCAGGTCCAAAGGCGGCTGAAGTGGGTGATGACTTCCTGGGAGACTTTGTGGTGGGCGAGAGGGTGTGGGTGAATGGCGTGAAGCCAGGCGTGGTGCAGTACCTGGGTGAGACACAGTTTGCGCCAGGCCAGTGGGCCGGCGTGGTCTTGGACGACCCGGTGGGCAAGAACGATGGAGCTGTGGGTGGCGTGCGCTACTTCGAGTGCCCGGCTCTACAGGGCATCTTCACGCGGCCCTCCAAGCTGACCCGCCAGCCCACCGCTGAGGGCTCGGGCAGTGATACGCACTCGGTGGAATCCCTCACGGCCCAGAACCTGTCCCTGCATTCTGGCACGGCCACGCCCCCACTCACAGGCCGAGTCATCCCCCTGCGGGAGAGTGTTCTTAACAGCTCAGTGAAGACGGGCAATGAGTCTGGTTCCAACCTCTCCGACAGTGGTTCTGTGAAGCGCGGTGACAAGGACCTCCACCTGGGAGACCGTGTGCTG
Seq C2 exon
GTTGGTGGGACGAAGACCGGTGTGGTGCGATATGTTGGGGAGACGGACTTTGCCAAAGGCGAGTGGTGTGGTGTGGAGCTGGATGAGCCCCTCGGGAAGAACGACGGGGCGGTGGCAGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.543 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGAGGATGGCAGAGAG
R:
ACCGCCCCGTCGTTCTTC
Band lengths:
303-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: