DreEX0022128 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58728740-58766889:+
Coord C1 exon
chr5:58728740-58728958
Coord A exon
chr5:58750239-58750753
Coord C2 exon
chr5:58766765-58766889
Length
515 bp
Sequences
Splice sites
3' ss Seq
TTTGCTAAATCTGTCCACAGGTT
3' ss Score
9.66
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TCCTGCAGGTAGAATGGAGAGGGATATCCGCCATCCTCATATTTAGTGCCTCAGTGTAAACCCTTAATAAGCTACGGAAACTTGAAGTTTCACCAGTGGACATAATGAACATGCTAAAGTCCAGTGGCTTGAAGATCCCTGGCAGGGGTCCCAAACACGCCAGTCCAGTAGGACGAACAACCGCTGGCCCCTCAACCAGTCCTGCGACTCAAAAAGAAG
Seq A exon
GTTGCCCCTACAAGCAGACGACTCCCACCCCAAGCAGCAATGCCTCAGACAAGTCCAGCTCCAAAGCCTCTGAGGTTGGCGACGAGGTGGCCGGCGACTTTGTAGTCGGTGAACGTGTCTGGGTGAACGGAGTCAAGCCGGGAGTCATTGCCTACCTTGGAGAGACCCAGTTTTCCCCGGGACAGTGGGCGGGAGTGGTGCTGAATGATCTGGTTGGAAAAAACGATGGCTCTGTCAATGGCGTGCGCTACTTCGAGTGCCAGGCTTTGCAGGGCATCTTCACGAGGCCTTCTAAGCTCACACGCCAACCCATTGGAGACGGGAGCGATGAGCAGCAGAACGCACAGCTCCAAGGTGGAGCAGGAGCTTCCGGACAGCGCGTGGTCATGCCGCTCAGAGAAGGCATGCTTAACAGCTCTGTCAAAACCGGCAACGAGTCCGGATCCAACATGTCTGACAGTGGATCGGTGAAGAAAGGTGGAGAGAAGGACCTAAAAGTTGGAGATCGTGTGCTG
Seq C2 exon
GTTGGCGGCACTAAAACAGGAGTGGTGCGTTATGTGGGAGAGACTGACTTTGCCAAGGGCGAGTGGTGTGGAGTGGAGCTGGACGAGCCGTTAGGGAAAAACGATGGAGCTGTTGCTGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.465 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=38.4),PF0130220=CAP_GLY=PU(7.6=2.9)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAGGTAGAATGGAGAGG
R:
GGTTCCAGCAACAGCTCCATC
Band lengths:
342-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]