BtaEX6110179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33597938-33619646:-
Coord C1 exon
chr25:33619523-33619646
Coord A exon
chr25:33601737-33602287
Coord C2 exon
chr25:33597938-33598062
Length
551 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCCTGTCTCCACAGGCT
3' ss Score
12.51
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGCAGAAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTCAAGCCCCATGGGTCGGACGTCCACTGGGTCAGCCTCGGCCTCGACCACCGTAGCGCCCACTGGCTCTAAGGAAG
Seq A exon
GCTCCCCCCTGCACAAGCAGGCTTCGGGCCCCCCGGCTGCGGCCCCCGCTGCCCCCGAGAAGCCCGGCGCCAAGGCGGCCGAGGTGGGCGACGAGTTCGCCGGGGACTTCGTGGTGGGCGAGCGTGTGTGGGTGAACGGCGTGAAGCCGGGCGTGGTGCAGTACCTGGGGGAGACGCAGTTCGCGCCGGGCCAGTGGGCGGGCGTGGTGCTGGACGAGCCGGTGGGCAAGAACGACGGCGCGGTGGGCGGCGTGCGCTACTTCGAGTGCCCGGCCCTGCAGGGCATCTTCACGCGGCCCTCCAAGCTCACGCGGCAGCCCGCGGCCGAGGGCTCTGGCAGCGACGCCCATTCGGTCGAGTCGCTGACCGCCCAGAACCTGTCGCTGCACTCGGGCACCGCCACGCCGCCGCTCACCAGCCGCGTCATCCCCCTGCGGGAGAGCGTCCTCAACAGCTCGGTCAAGACCGGCAACGAGTCGGGCTCCAACCTCTCGGACAGCGGCTCCGTGAAACGCGGCGACAAGGACCTGCGCCTCGGAGACCGCGTGCTG
Seq C2 exon
GTTGGTGGGACGAAGACTGGCGTGGTGCGGTATGTGGGGGAGACAGACTTTGCCAAGGGCGAGTGGTGTGGCGTGGAACTGGACGAGCCCCTTGGGAAGAACGATGGGGCGGTGGCGGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875-'0-4,'0-2,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.549 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=35.9),PF0130220=CAP_GLY=PU(7.6=2.7)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCACTCAAGCCCCATG
R:
CACCGCCCCATCGTTCTTC
Band lengths:
198-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]