MmuEX0012345 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108973652-108974109:+
Coord C1 exon
chr9:108973652-108973696
Coord A exon
chr9:108973813-108973875
Coord C2 exon
chr9:108974065-108974109
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCAGGATGTTTTGTTTGCAGGGT
3' ss Score
5.27
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGGGAGCCAGGCAGTGATGGTGACCCTGGACCTAAAGGAGACAGG
Seq A exon
GGTGTACCAGGCATCAAAGGCGATGTGGGAGAGCCTGGAAAGAGGGGTCATGATGGCAACCCA
Seq C2 exon
GGTCTCCCGGGAGAGCGTGGTGTGGCTGGGCCTGAAGGGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'87-95,'87-94,88-95
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.911
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=FE(28.6=100)
C2:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(17.5=73.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGCAGTGATGGTGAC
R:
GGCTTCCCTTCAGGCCCAG
Band lengths:
84-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types