BtaEX6095658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51879412-51879827:+
Coord C1 exon
chr22:51879412-51879456
Coord A exon
chr22:51879572-51879634
Coord C2 exon
chr22:51879783-51879827
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTCCGACACTCCGCTTGCAGGGT
3' ss Score
7.84
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGGGATCCAGGCAGTGATGGCGACCGAGGCCCCAAAGGAGACAGG
Seq A exon
GGTGAGCCGGGCATCAAGGGCGACCGGGGAGAGCCTGGACAGAGGGGTCCGAATGGCAGCCCG
Seq C2 exon
GGTCTGCCAGGAGAGCGCGGCGTGGCTGGGCCCGAGGGGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'80-83,'80-82,81-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.6=100)
A:
PF0139113=Collagen=FE(29.4=100)
C2:
PF0139113=Collagen=FE(20.6=100),PF0139113=Collagen=PU(14.8=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGGCAGTGATGGCG
R:
GCGCTCTCCTGGCAGACC
Band lengths:
60-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]