MmuEX0020067 @ mm9
Exon Skipping
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34570725-34576248:-
Coord C1 exon
chr2:34576088-34576248
Coord A exon
chr2:34572836-34572902
Coord C2 exon
chr2:34570725-34570850
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTAATTTTTTTCAGGTT
3' ss Score
11.04
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
CAACTCGGAGCAGAAGCCGAAGTAATATGTTAATGGACCTACATATGGATCATGAAGGATCATCTCAAGAAACCATCCAGGAGGTACAGCCAGAAGAGGTGCTGGTCATTTCCTTAGGGACAGGCCCTCAGCTCACTCCAGGGATGATGTCAGAAAATGAG
Seq A exon
GTTCTAAACATGCAGCTTTCGGATGGAGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCACG
Seq C2 exon
GTCCTTCCAATCGCTCCAATTCGGTGTCTTCTCTCGACCTGGAGGGAGAGTCTGTATCTGAACTTGGGGCAGGACCTTCTGGGAGTAACGGAGTTGAAGCACTGCAGCTGTTAGAGCACGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867-'20-21,'20-19,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.998 C2=0.997
Domain overlap (PFAM):
C1:
PF153241=TALPID3=FE(25.0=100)
A:
NO
C2:
PF153241=TALPID3=FE(19.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGGAGGTACAGCCAGA
R:
CCGTTACTCCCAGAAGGTCCT
Band lengths:
179-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: