GgaEX0001026 @ galGal3
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10332545-10334511:+
Coord C1 exon
chr17:10332545-10332705
Coord A exon
chr17:10333591-10333657
Coord C2 exon
chr17:10334386-10334511
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCATTCCTCCTCTCCCCAGGTC
3' ss Score
12.51
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
Exon sequences
Seq C1 exon
CAACTCGTAGCAGAAGTAGGTCAAATATTCTCATGGATCAGCATGGGGATCATGAAGGATCCTCCCAGGAGACCATCCCAGAAGTTCAGCCAGAAGAAGTGCTGGTGATTTCCCTGGGAGCAGGTCCGCAGATTACTCCAGGAATGATGTCAGAAAATGAG
Seq A exon
GTCTTAAATATGCAGCTTGCAGATGGCGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCATG
Seq C2 exon
GTCCTTCAAATCGCTCCAACTCAGTATCATCTTTGGATTTGGAAGGGGAGTCTGTATCAGAGCTCGGTGCAGGTCCGTCTGGGAGCAATGGTGTTGAAGCTCTGCAGCTGCTGGAGCATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAAGAAGTGCTGGTGAT
R:
AGCTTCAACACCATTGCTCCC
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]