RnoEX0037727 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13786183-13791780:-
Coord C1 exon
chr3:13791620-13791780
Coord A exon
chr3:13788006-13788135
Coord C2 exon
chr3:13786183-13786308
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTTTCTTTTTCAGGTT
3' ss Score
13.44
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CAACTCGGAGCCGAAGCCGAAGTAATATGCTAATGGACCTACATATGGATCATGAAGGGTCATCTCAAGAAACCATCCAGGAGGTGCAGCCAGAAGAGGTGCTGGTCATTTCCTTAGGGACAGGTCCTCAGCTCACTCCAGGGATGATGTCAGAAAATGAG
Seq A exon
GTTCTAAACATGCAGCTTTCGGACGGAGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCACGGTAAACCTGATAAAACCTTGCGCTTTTCCCTGTGCAGTGATAATCTGGAAGGCATATCTGAAG
Seq C2 exon
GTCCTTCCAATCGCTCTAATTCAGTGTCTTCTCTCGACCTGGAAGGAGAGTCTGTATCTGAACTTGGGGCAGGACCTTCTGGGAGTAATGGAGTTGAAGCACTGCAACTGTTAGAACACGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-'17-14,'17-13,20-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=0.864 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000066961fB5856
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCGAAGCCGAAGTAATA
R:
TTACTCCCAGAAGGTCCTGCC
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]