GgaEX0001026 @ galGal4
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr17:9610550-9612187:+
Coord C1 exon
chr17:9610550-9610710
Coord A exon
chr17:9611596-9611725
Coord C2 exon
chr17:9612166-9612187
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCATTCCTCCTCTCCCCAGGTC
3' ss Score
12.51
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CAACTCGTAGCAGAAGTAGGTCAAATATTCTCATGGATCAGCATGGGGATCATGAAGGATCCTCCCAGGAGACCATCCCAGAAGTTCAGCCAGAAGAAGTGCTGGTGATTTCCCTGGGAGCAGGTCCGCAGATTACTCCAGGAATGATGTCAGAAAATGAG
Seq A exon
GTCTTAAATATGCAGCTTGCAGATGGCGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCATGGTAAACCTGATAAAACCTTGCGCTTTTCACTCTGCAGTGATAATCTGGAAGGAATATCTGAAG
Seq C2 exon
GTTATTATGGTCCTCTATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'8-10,'8-9,10-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.644 C2=0.125
Domain overlap (PFAM):
C1:
PF153241=TALPID3=FE(44.9=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000001466fB7807
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]